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feat!: Support semicolon-separated lists in Factor Value fields #95

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merged 15 commits into from
Jan 19, 2024

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@sellth sellth commented Jul 26, 2023

Factor Values behave very similar to Characteristics in Sample Name materials, but are meant to represent “variable manipulated by an experimentalist with the intention to affect biological systems” i.e. sample conditions.

https://isa-specs.readthedocs.io/en/latest/isatab.html?highlight=factor%20value#factor-value

Since we already process semicolon-separated list-type content in Characteristics, it makes a lot of sense to also do this for Factor Value nodes. fixes #93

To do:

  • check if other places need change
  • test for factor value lists
  • add to documentation

BEGIN_COMMIT_OVERRIDE
feat!: Support semicolon-separated lists in Factor Value fields
END_COMMIT_OVERRIDE

@sellth sellth marked this pull request as ready for review July 28, 2023 10:40
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I believe already done in head together with #112. Please review and possibly close.

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codecov bot commented Jan 16, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (2572456) 96.52% compared to head (09c300f) 96.53%.

Additional details and impacted files
@@           Coverage Diff           @@
##           master      #95   +/-   ##
=======================================
  Coverage   96.52%   96.53%           
=======================================
  Files          29       29           
  Lines        3428     3431    +3     
=======================================
+ Hits         3309     3312    +3     
  Misses        119      119           
Flag Coverage Δ
python 96.53% <100.00%> (+<0.01%) ⬆️

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@sellth sellth changed the title enable list processing for factor values feat: Enable list processing for factor values Jan 18, 2024
@sellth sellth enabled auto-merge (squash) January 19, 2024 15:28
@holtgrewe holtgrewe self-requested a review January 19, 2024 15:40
@sellth sellth merged commit 5518814 into master Jan 19, 2024
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@sellth sellth deleted the factor_value_lists branch January 19, 2024 15:40
@sellth sellth changed the title feat: Enable list processing for factor values feat!: Support semicolon-separated lists in factor value fields Feb 2, 2024
@sellth sellth changed the title feat!: Support semicolon-separated lists in factor value fields feat!: Support semicolon-separated lists in Factor Value fields Feb 2, 2024
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Allow lists in Factor Value fields
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