Adding tests for samplesheets config.

sodar_cli/samplesheet/config.py

@@ -32,11 +32,11 @@ class SampleSheetRetrieveConfig:
     project_uuid: uuid.UUID
 
     @staticmethod
-    def create(args, project_config, toml_config=None):
+    def create(args, samplesheet_config, toml_config=None):
         _ = toml_config
         # toml_config = toml_config or {}
         return SampleSheetRetrieveConfig(
-            project_config=project_config, project_uuid=args.project_uuid
+            samplesheet_config=samplesheet_config, project_uuid=args.project_uuid
         )
 
 
@@ -54,10 +54,12 @@ class SampleSheetImportConfig:
     file_paths: typing.List[str]
 
     @staticmethod
-    def create(args, project_config, toml_config=None):
+    def create(args, samplesheet_config, toml_config=None):
         # toml_config = toml_config or {}
         return SampleSheetImportConfig(
-            project_config=project_config, file_paths=list(args.file_paths)
+            samplesheet_config=samplesheet_config,
+            project_uuid=args.project_uuid,
+            file_paths=list(args.file_paths),
         )
 
 
@@ -72,10 +74,10 @@ class SampleSheetExportConfig:
     project_uuid: uuid.UUID
 
     @staticmethod
-    def create(args, project_config, toml_config=None):
+    def create(args, samplesheet_config, toml_config=None):
         # toml_config = toml_config or {}
         return SampleSheetExportConfig(
-            project_config=project_config, project_uuid=args.project_uuid
+            samplesheet_config=samplesheet_config, project_uuid=args.project_uuid
         )
 
 
@@ -90,6 +92,8 @@ class SampleDataFileExistsConfig:
     md5_sum: str
 
     @staticmethod
-    def create(args, project_config, toml_config=None):
+    def create(args, samplesheet_config, toml_config=None):
         # toml_config = toml_config or {}
-        return SampleDataFileExistsConfig(project_config=project_config, md5_sum=args.md5_sum)
+        return SampleDataFileExistsConfig(
+            samplesheet_config=samplesheet_config, md5_sum=args.md5_sum
+        )

tests/test_samplesheet_config.py

@@ -0,0 +1,45 @@
+from types import SimpleNamespace
+
+from sodar_cli.common import CommonConfig
+from sodar_cli.samplesheet import config
+
+import pytest
+
+
+@pytest.fixture
+def args():
+    return SimpleNamespace(
+        verbose=False,
+        verify_ssl=True,
+        sodar_api_token="XXX",
+        sodar_server_url="https://sodar.example.com/",
+        project_uuid="123",
+        file_paths=[],
+        md5_sum="asdf",
+    )
+
+
+@pytest.fixture
+def common_config(args):
+    return CommonConfig.create(args)
+
+
+@pytest.fixture
+def project_config(args, common_config):
+    return config.SampleSheetConfig.create(args, common_config)
+
+
+def test_samplesheet_retrieve_config(args, common_config):
+    config.SampleSheetRetrieveConfig.create(args, common_config)
+
+
+def test_samplesheet_import_config(args, common_config):
+    config.SampleSheetImportConfig.create(args, common_config)
+
+
+def test_samplesheet_export_config(args, common_config):
+    config.SampleSheetExportConfig.create(args, common_config)
+
+
+def test_sample_data_file_exists_config(args, common_config):
+    config.SampleDataFileExistsConfig.create(args, common_config)