How to build bricks

1. Create a brick named {newbrick} from this template

gh repo create biobricks-ai/{newbrick} -p biobricks-ai/brick-template --public
gh repo clone biobricks-ai/{newbrick}
cd newbrick

2. Edit stages according to your needs: Recommended scripts:

   • 01_download.sh
   • 02_unzip.sh
   • 03_build.sh calling a function to process individual files like csv2parquet.R or csv2parquet.py

3. Replace stages in dvc.yaml with your new stages

4. Build your brick

dvc repro # runs new stages

5. Push the data to biobricks.ai

dvc push -r s3.biobricks.ai 

6. Commit the brick

git add -A && git commit -m "some message"
git push

7. Monitor the bricktools github action