bioconda · dpryan79 · Jan 2, 2019 · Jan 2, 2019 · Jan 2, 2019
diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -814,6 +814,9 @@ recipes/bioconductor-browservizdemo
 recipes/bioconductor-pannbuilder
 recipes/bioconductor-splicer
 recipes/bioconductor-flowq
+recipes/bioconductor-pbcmc
+recipes/bioconductor-mqtl.nmr
+recipes/bioconductor-nudge
 
 # Old bioconductor version that's no longer available
 recipes/bioconductor-edger/3.12.1
@@ -849,7 +852,6 @@ recipes/bioconductor-msgfplus
 recipes/bioconductor-msgfgui
 recipes/bioconductor-hpaanalyze
 recipes/bioconductor-hilbertvisgui
-recipes/bioconductor-glad
 recipes/bioconductor-ggtree
 recipes/bioconductor-explorase
 recipes/bioconductor-envisionquery
@@ -858,6 +860,7 @@ recipes/bioconductor-dapardata
 recipes/bioconductor-chemmineob
 recipes/bioconductor-gaggle
 recipes/bioconductor-rcy3
+recipes/bioconductor-categorycompare
 recipes/bioconductor-rsbml
 recipes/bioconductor-sevenbridges
 recipes/bioconductor-selex
@@ -894,6 +897,11 @@ recipes/bioconductor-dsimer
 recipes/bioconductor-pga
 recipes/bioconductor-linc
 recipes/bioconductor-fourcseq
+recipes/bioconductor-rmassbank
+recipes/bioconductor-iclusterplus
+recipes/r-qpcr
+recipes/bioconductor-normqpcr
+recipes/bioconductor-post
 
 # r-dagitity missing -> missing of V8 in cf
 recipes/r-pcalg
@@ -932,12 +940,13 @@ recipes/bioconductor-mapkl
 recipes/bioconductor-gqtlstats
 recipes/bioconductor-gwascat
 recipes/bioconductor-vtpnet
-recipes/bioconductor-pi
 recipes/bioconductor-r3cpet
 recipes/bioconductor-omicspca
 recipes/bioconductor-madseq
 recipes/bioconductor-doqtl
 recipes/bioconductor-debrowser
+recipes/r-xgr
+recipes/bioconductor-pi
 
 # Not enough memory on circleci
 recipes/bioconductor-conumee
@@ -950,3 +959,4 @@ recipes/bioconductor-onassis
 recipes/bioconductor-cbaf
 recipes/bioconductor-esatac
 recipes/bioconductor-arrayexpresshts
+recipes/bioconductor-rdavidwebservice
diff --git a/recipes/bioconductor-amountain/meta.yaml b/recipes/bioconductor-amountain/meta.yaml
@@ -21,8 +21,10 @@ build:
 requirements:
   host:
     - r-base
+    - gsl
   run:
     - r-base
+    - gsl
   build:
     - {{ compiler('c') }}
     - make

diff --git a/recipes/bioconductor-glad/meta.yaml b/recipes/bioconductor-glad/meta.yaml
@@ -21,9 +21,11 @@ requirements:
   host:
     - r-aws
     - r-base
+    - gsl
   run:
     - r-aws
     - r-base
+    - gsl
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}

diff --git a/recipes/bioconductor-mageckflute/meta.yaml b/recipes/bioconductor-mageckflute/meta.yaml
@@ -25,6 +25,7 @@ requirements:
     - 'bioconductor-dose >=3.8.0,<3.9.0'
     - 'bioconductor-pathview >=1.22.0,<1.23.0'
     - 'bioconductor-sva >=3.30.0,<3.31.0'
+    - 'bioconductor-bladderbatch >=1.20.0,<1.21.0'
     - r-base
     - r-data.table
     - r-ggextra
@@ -41,6 +42,7 @@ requirements:
     - 'bioconductor-dose >=3.8.0,<3.9.0'
     - 'bioconductor-pathview >=1.22.0,<1.23.0'
     - 'bioconductor-sva >=3.30.0,<3.31.0'
+    - 'bioconductor-bladderbatch >=1.20.0,<1.21.0'
     - r-base
     - r-data.table
     - r-ggextra

diff --git a/recipes/bioconductor-rmat/meta.yaml b/recipes/bioconductor-rmat/meta.yaml
@@ -25,12 +25,14 @@ requirements:
     - 'bioconductor-biocgenerics >=0.28.0,<0.29.0'
     - 'bioconductor-iranges >=2.16.0,<2.17.0'
     - r-base
+    - gsl
   run:
     - 'bioconductor-affxparser >=1.54.0,<1.55.0'
     - 'bioconductor-biobase >=2.42.0,<2.43.0'
     - 'bioconductor-biocgenerics >=0.28.0,<0.29.0'
     - 'bioconductor-iranges >=2.16.0,<2.17.0'
     - r-base
+    - gsl
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}

diff --git a/recipes/bioconductor-tissueenrich/meta.yaml b/recipes/bioconductor-tissueenrich/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.2.0" %}
+{% set version = "1.2.1" %}
 {% set name = "TissueEnrich" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad8ab5d572c9104d55e51de7aff80554
+  md5: e35456c0b1b802568e099654a8d933e6
 build:
   number: 0
   rpaths:

diff --git a/recipes/r-pscbs/meta.yaml b/recipes/r-pscbs/meta.yaml
@@ -14,46 +14,39 @@ source:
   sha256: 2196913c8dcd791c79926873de6e705d5ef4560d5fa05b4d0b91cf77e6072709
 
 build:
-  merge_build_host: True  # [win]
-
-  number: 1
-  skip: true  # [win32]
-
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
 
 requirements:
   build:
-    - {{posix}}zip               # [win]
 
   host:
     - r-base
-    - 'bioconductor-dnacopy >=1.54.0,<1.56.0'
+    - bioconductor-dnacopy
     - r-r.cache >=0.12.0
     - r-r.methodss3 >=1.7.1
     - r-r.oo >=1.21.0
     - r-r.utils >=2.5.0
-    - 'bioconductor-aroma.light >=3.10.0,<3.12.0'
+    - bioconductor-aroma.light
     - r-future >=1.5.0
     - r-listenv >=0.6.0
     - r-matrixstats >=0.52.2
-
   run:
     - r-base
-    - 'bioconductor-dnacopy >=1.54.0,<1.56.0'
+    - bioconductor-dnacopy
     - r-r.cache >=0.12.0
     - r-r.methodss3 >=1.7.1
     - r-r.oo >=1.21.0
     - r-r.utils >=2.5.0
-    - 'bioconductor-aroma.light >=3.10.0,<3.12.0'
+    - bioconductor-aroma.light
     - r-future >=1.5.0
     - r-listenv >=0.6.0
     - r-matrixstats >=0.52.2
 
 test:
   commands:
-
     - $R -e "library('PSCBS')"           # [not win]
     - "\"%R%\" -e \"library('PSCBS')\""  # [win]
 
@@ -64,12 +57,3 @@ about:
     abnormal copy number within each parental chromosome.  Both tumor-normal paired
     and tumor-only analyses are supported.
   license_family: GPL3
-extra:
-  recipe-maintainers:
-    - MathiasHaudgaard
-    - FrodePedersen
-    - ArneKr
-    - johanneskoester
-    - bgruening
-    - daler
-    - jdblischak