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chore: Bump bamtools to 2.5.2 #988

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martin-g
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2.5.2 is the only version at the moment that provides linux-aarch64 package: https://anaconda.org/bioconda/bamtools/files

I faced the following error

WARNING: failed to get package records, retrying.  exception was: Unsatisfiable dependencies for platform linux-aarch64: {MatchSpec("bamtools=2.5.1")}
Encountered problems while solving:
  - nothing provides requested bamtools 2.5.1.*

while adding linux-aarch64 to scalpel
(bioconda/bioconda-recipes#47964)

Full logs with the error:

Successful build after adding custom conda_build_config.yaml for scalpel:

2.5.2 is the only version at the moment that provides linux-aarch64
package: https://anaconda.org/bioconda/bamtools/files

I faced the following error
```
WARNING: failed to get package records, retrying.  exception was: Unsatisfiable dependencies for platform linux-aarch64: {MatchSpec("bamtools=2.5.1")}
Encountered problems while solving:
  - nothing provides requested bamtools 2.5.1.*
```
while adding linux-aarch64 to `scalpel`
  (bioconda/bioconda-recipes#47964)

Full logs with the error:
- https://circleci.com/api/v1.1/project/github/bioconda/bioconda-recipes/186948/output/107/0?file=true&allocation-id=664c88870a2ca54ac5eb924f-0-build%2FABCDEFGH

Successful build after adding custom conda_build_config.yaml for
scalpel:
- https://app.circleci.com/pipelines/github/bioconda/bioconda-recipes/116194/workflows/00d6dc8f-1d05-48a5-b15f-1ae3bff71433/jobs/186951

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
@martin-g martin-g changed the title Bump bamtools to 2.5.2 chore: Bump bamtools to 2.5.2 May 21, 2024
aliciaaevans pushed a commit that referenced this pull request Jun 3, 2024
Amongst others, this includes:
- Update default minimum system targets to
- `glibc 2.17`/CentOS 7 ( \*needs recipes to include new `- {{
stdlib("c") }}` dep in `requirements/build`)
    - macOS 10.13
- Python 3.11 and 3.12

closes gh-938, gh-988

---------

Signed-off-by: Marcel Bargull <marcel.bargull@udo.edu>
@martin-g
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martin-g commented Jun 4, 2024

Done with #991

@martin-g martin-g closed this Jun 4, 2024
@martin-g martin-g deleted the bamtools-2.5.2-for-aarch64 branch June 4, 2024 06:35
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