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12 Open 40 Closed
12 Open 40 Closed
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Issues list

FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence
#61 opened Feb 14, 2024 by hpages
Support for CSI indexes
#58 opened Sep 17, 2023 by diego-rt
CRAM support - why not?
#56 opened Aug 22, 2023 by pd3
5
Rsamtools with multiple threads?
#55 opened May 11, 2023 by junjunlab
2
min_nucleotide_depth parameter of PileupParam doesn't take 0
#19 opened Feb 18, 2021 by sarahwajid
1
Rsamtools cannot handle csi index?
#17 opened Dec 1, 2020 by Mailinnia
Bug in windows version of Rsamtools Fasta sequence retrieval
#14 opened Oct 16, 2019 by dnieuw
Rsamtools::pileup counts overlapping paired-end reads twice
#13 opened Oct 10, 2019 by alkodsi
5
Error with getSeq from opened fasta file (Rsamtools 2.0.2)
#12 opened Oct 4, 2019 by farshadf
7
Bug in scanTabix
#8 opened Jul 24, 2019 by timoast
4
handle multiple calls to scanBam() on an open BamFile
#6 opened Apr 5, 2019 by mtmorgan
2
.bai files are not found when "bam" is part of the file path
#4 opened Dec 20, 2018 by ericfournier2
ProTip! Exclude everything labeled bug with -label:bug.