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gap size #48

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tan5251 opened this issue Jan 23, 2021 · 2 comments
Open

gap size #48

tan5251 opened this issue Jan 23, 2021 · 2 comments

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@tan5251
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tan5251 commented Jan 23, 2021

How can I determine the gap size？ My ChIP-seq data is H3K27me3 modification that is a typical broad peaks. I plan to set the gap size to 5. Is it right? Can you give some suggestions about the selection of gap size? Thanks advance!
@endrebak
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The original manuscript suggested a gap size of 3 for H3K27me3. I have found it to work well :)

@tan5251
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tan5251 commented Jan 27, 2021

Thanks for your reply.

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@endrebak @tan5251