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Optimize sample metadata barplot computation #298

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fedarko opened this issue Aug 5, 2020 · 0 comments · Fixed by #313
Closed

Optimize sample metadata barplot computation #298

fedarko opened this issue Aug 5, 2020 · 0 comments · Fixed by #313
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barplots performance
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1.1 Release

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fedarko commented Aug 5, 2020

Since it takes ~10-15 sec to compute the barplots for the HMP dataset tree. The bottleneck here is likely the fact that every tip requires accessing the BIOM table to figure out how many samples of what types contain this tip, etc.
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Speed up and test sample metadata barplot computations fedarko/empress
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