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No tips error trying to classify #13

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christineolson-ucsf opened this issue Feb 17, 2023 · 7 comments
Closed

No tips error trying to classify #13

christineolson-ucsf opened this issue Feb 17, 2023 · 7 comments

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@christineolson-ucsf
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Hello, in trying to use Greengenes2 with a FeatureData[Sequence] object, I get the following error saying "no requested tips found", full error message also attached. Can you please help me resolve this?
![image](https://user-images.githubusercontent.com/91097042/
image (1)
219550993-ba1f3b3e-fbae-47ab-b22a-b7ab5a86e2d1.png)

@christineolson-ucsf
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Other image of command run and initial error:
image (2)

@wasade
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wasade commented Feb 17, 2023

Thanks @christineolson-ucsf! Could you tell me how the FeatureData[Sequence] artifact was constructed, and are these 16S V4?

I am very interested in improving the error messages the plugin produces, so I'm hoping to use this github issue to guide a data detection method to better inform users.

@Ilaria-Pirona
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I am having the same problem while running qiime greengenes2 taxonomy-from-table (qiime2-2022.8). I am trying to assing the taxonomy to my V3-V4 regions. I followed the tutorial at link and the first command of the section "If you have V4 data" did not raise errors.

@wasade
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wasade commented Apr 4, 2023

Hi @Ilaria-Pirona,

What specific primers were used? The majority of the data placed with DEPP are derived from 515F-806R. If your primers are relative to other positions, then it is unlikely your ASVs will be represented. In that scenario, I recommend using the non-v4-16s action

@ebadiea
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ebadiea commented Feb 6, 2024

I got the same error "No requested tips found" and don't know how to fix it

@wasade
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wasade commented Feb 6, 2024

Thanks, @ebadiea. Can you describe the data, and the commands used?

@wasade
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wasade commented Oct 8, 2024

Please reopen if this is still a problem

@wasade wasade closed this as completed Oct 8, 2024
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