Fixing paper for submission #7
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Not LGTM
This needs review.
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@arfon, sorry. I was looking at whether the referencing labels show up in the text (Biopython call themselves Biopython and not BioPython FWIW) and noticed that the referencing is broken by et al. truncation.
In text snippet:
Similarly, Biopython (al 2009) provides...
References:
al, Cock P.J.A. et. 2009. “Biopython: Freely Available Python Tools for Computational Molecular Biology and Bioinformatics.” Bioinformatics 25 (11): 1422–3. doi:10.1093/bioinformatics/btp163.
al, Stajich J.E. et. 2002. “The Bioperl Toolkit: Perl Modules for the Life Sciences.” Genome Research 12 (10): 1611–8. doi:10.1101/gr.361602.
I am happy to make the required changes in another PR. Does JOSS just use pandoc for this so I can check?
| @@ -55,7 +55,7 @@ @Article{BioPerl | |||
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| @Article{BioPython, | |||
| Packages within bíogo/ncbi provide Go application programmer interfaces to the NCBI BLAST and EUtilities services. | ||
| The design of bíogo/ncbi is light weight, allowing the user to make use of the Go language's control structures and data types, rather than imposing a library-specific access approach. | ||
| In addition to allowing remote BLAST searches, BioPerl and Biopython provide mechanisms to parse XML output from local BLAST search via BioPerl's Bio::SearchIO and Biopythons Bio.Blast NCBIXML | ||
| In addition to allowing remote BLAST searches, BioPerl and Biopython provide mechanisms to parse XML output from local BLAST search via BioPerl's Bio::SearchIO and Biopythons Bio.Blast NCBIXML |
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Yeah we just use pandoc with citeproc for the bibtex. BTW I made the change to the author list in the bibtex as pandoc can't parse author lists with commas - instead I think it needs to be 'Smith A.M. and Jones A. and... etc' |
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I'm fiddling at the moment. Will send a PR and /cc you. |
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Closing in favour of #8. |
👋 @kortschak, I had to make these small changes when accepting your JOSS paper.