Use-cases for the BioImage.IO publication. This repository contains the data, scripts and other resources for the following example applications:
case1-stardist: Direct application of the pretrained StarDist H&E nucleus segmentation model.case2-finetuning: Fine-tuning of a 3d U-Net trained with zero-cost for segmentation of plant cells in light microscopy.case3-devtools: Usage of python and web developer tools to deliver the best performing entry of the Kaggle HPA segmentation challenge.case4-research: Publication of a recent method for domain adaptation using the modelzoo.
See the publication for more details and see https://bioimage.io/#/ for the modelzoo website.