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@bioinfo-pf-curie

Institut Curie, Bioinformatics Core Facility

bioinformatics platform of the Institut Curie

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  1. TMB TMB Public

    Tumor Mutational Burden

    Python 55 15

  2. trainings trainings Public

    Ressources for Boinformatics Trainings

    8 7

  3. geniac geniac Public

    Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow

    Python 8 3

  4. RNA-seq RNA-seq Public

    Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)

    HTML 6 3

  5. nf-VIF nf-VIF Public

    A Nextflow-based Virus Insertion Finder

    Python 5 5

  6. mpiBWA mpiBWA Public

    C 5 2

Repositories

Showing 10 of 42 repositories
  • RNA-seq Public

    Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)

    bioinfo-pf-curie/RNA-seq’s past year of commit activity
    HTML 6 3 1 0 Updated Oct 23, 2024
  • multiplex-imaging-analysis Public

    Processing of multiplex imaging data based on multiple technologies (ORION, CODEX, etc.)

    bioinfo-pf-curie/multiplex-imaging-analysis’s past year of commit activity
    Python 0 0 0 0 Updated Oct 15, 2024
  • TMB Public

    Tumor Mutational Burden

    bioinfo-pf-curie/TMB’s past year of commit activity
    Python 55 15 18 0 Updated Aug 29, 2024
  • vegan Public

    Variant calling pipeline for whole Exome and whole Genome sequencing cANcer data

    bioinfo-pf-curie/vegan’s past year of commit activity
    Nextflow 1 0 0 0 Updated Aug 29, 2024
  • geniac Public

    Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow

    bioinfo-pf-curie/geniac’s past year of commit activity
    Python 8 3 0 0 Updated Aug 27, 2024
  • ChIP-seq Public

    Nextflow pipeline for ChIP-seq data quality controls and analysis

    bioinfo-pf-curie/ChIP-seq’s past year of commit activity
    HTML 4 9 2 0 Updated Jun 24, 2024
  • nf-neoant Public

    Detection of neoantigens from WES and RNA sequencing data

    bioinfo-pf-curie/nf-neoant’s past year of commit activity
    Python 1 0 0 0 Updated Jun 19, 2024
  • biogitflow Public

    Development worklow protocols for bioinformatics pipelines with git and gitlab

    bioinfo-pf-curie/biogitflow’s past year of commit activity
    HTML 0 0 1 0 Updated Jun 10, 2024
  • bioinfo-pf-curie/mpiMarkDup’s past year of commit activity
    C 1 1 6 0 Updated Mar 15, 2024
  • scChIP-inDrop Public

    inDrop single-cell ChIPseq data analysis

    bioinfo-pf-curie/scChIP-inDrop’s past year of commit activity
    0 0 0 0 Updated Jan 17, 2024

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