leish

This repository contains the data and MATLAB code for our paper:

Marla López, Diana Erazo, Juliana Hoyos, Cielo León, Patricia Fuya, Ligia Lugo, Juan Manuel Cordovez, Camila González Measuring spatial co-occurrences of species potentially involved in Leishmania transmission cycles through a predictive and fieldwork approach

How to download or install

You can download the compendium as a zip from from this URL: https://github.com/biomac-lab/leish/archive/master.zip

Analysis, figures and tables

Run analysis, figures and tables from main_script.m

Put all the following files in the same folder:

MAIN SCRIPT: main_script.m

DATA:

1. colombian grid (colgrid.mat) - Colombian grid and its borders (stored in CG 0 water, 1 land)
2. mammal data (mammals.mat) - mammal species coordinates
3. vector data (vectors.mat) - vector species coordinates

FUNCTIONS:

1. mammals_dataset.m
2. score_mammals.m
3. score_map.m
4. vector_dataset.m