Add missing copyright & license text to many unit tests

biopython · Sep 7, 2013 · 8d52315 · 8d52315
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diff --git a/Tests/test_Ace.py b/Tests/test_Ace.py
@@ -1,3 +1,10 @@
+# Copyright 2004 by Frank Kauff.  All rights reserved.
+# Revisions copyright 2008-2013 by Peter Cock. All rights reserved.
+# Revisions copyright 2009-2009 by Michiel de Hoon. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 import unittest
 
 from Bio.Sequencing import Ace

diff --git a/Tests/test_CodonUsage.py b/Tests/test_CodonUsage.py
@@ -1,3 +1,8 @@
+# Copyright 2003 by Iddo Friedberg.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 from Bio.SeqUtils import CodonUsage
 import os
 import sys

diff --git a/Tests/test_ColorSpiral.py b/Tests/test_ColorSpiral.py
@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+# Copyright 2013 by Leighton Pritchard.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 """ Tests for general functionality of the ColorSpiral utility
 """
 

diff --git a/Tests/test_Compass.py b/Tests/test_Compass.py
@@ -1,3 +1,8 @@
+# Copyright 2009 by James Casbon.  All rights reserved.
+# Revisions copyright 2009-2010 by Michiel de Hoon. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 """Tests for parsing Compass output.
 """
 import os

diff --git a/Tests/test_EmbossPrimer.py b/Tests/test_EmbossPrimer.py
@@ -1,4 +1,11 @@
 #!/usr/bin/env python
+# Copyright 2001 by Brad Chapman.  All rights reserved.
+# Revisions copyright 2008-2009 by Michiel de Hoon. All rights reserved.
+# Revisions copyright 2010-2011 by Peter Cock. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 """Tests for Primer-based programs in the Emboss suite.
 """
 # standard library

diff --git a/Tests/test_Entrez.py b/Tests/test_Entrez.py
@@ -1,3 +1,8 @@
+# Copyright 2008-2010 by Michiel de Hoon.  All rights reserved.
+# Revisions copyright 2009-2013 by Peter Cock. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 '''Testing code for Bio.Entrez parsers.
 '''
 

diff --git a/Tests/test_FSSP.py b/Tests/test_FSSP.py
@@ -1,3 +1,8 @@
+# Copyright 2001 by Iddo Friedberg.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 from Bio import FSSP
 from Bio.FSSP import FSSPTools
 import sys

diff --git a/Tests/test_Fasttree_tool.py b/Tests/test_Fasttree_tool.py
@@ -1,8 +1,10 @@
-# Copyright 2013 by Nate Sutton.  Based on test_Clustalw_tool.py by
-# Peter Cock.  Example code used from Biopython's Phylo cookbook by
-# Eric Talevich.  All rights reserved.  This code is part of the
-# Biopython distribution and governed by its license.  Please see
-# the LICENSE file that should have been included as part of this package.
+# Copyright 2013 by Nate Sutton.  All rights reserved.
+# Based on test_Clustalw_tool.py by Peter Cock.
+# Example code used from Biopython's Phylo cookbook by Eric Talevich.
+#
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 
 from Bio import MissingExternalDependencyError
 

diff --git a/Tests/test_GenBank.py b/Tests/test_GenBank.py
@@ -1,4 +1,11 @@
 #!/usr/bin/env python
+# Copyright 2001-2004 by Brad Chapman.  All rights reserved.
+# Revisions copyright 2007-2013 by Peter Cock. All rights reserved.
+# Revisions copyright 2013 by Kai Blin. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 """Test the GenBank parser and make sure everything is working smoothly.
 """
 # standard library

diff --git a/Tests/test_KEGG.py b/Tests/test_KEGG.py
@@ -1,3 +1,8 @@
+# Copyright 2001 by Tarjei Mikkelsen.  All rights reserved.
+# Revisions copyright 2007 by Michiel de Hoon. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 """Tests the basic functionality of the KEGG parsers.
 """
 

diff --git a/Tests/test_Location.py b/Tests/test_Location.py
@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+# Copyright 2001 by Brad Chapman.  All rights reserved.
+# Revisions copyright 2011-2013 by Peter Cock. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 """Test the Location code located in SeqFeature.py
 
 This checks to be sure fuzzy and non-fuzzy representations of locations

diff --git a/Tests/test_Nexus.py b/Tests/test_Nexus.py
@@ -1,3 +1,11 @@
+# Copyright 2005 by Iddo Friedberg.  All rights reserved.
+# Revisions copyright 2006-2013 by Peter Cock. All rights reserved.
+# Revisions copyright 2008 by Frank Kauff. All rights reserved.
+# Revisions copyright 2009 by Michiel de Hoon. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 import os.path
 import unittest
 import tempfile

diff --git a/Tests/test_ProtParam.py b/Tests/test_ProtParam.py
@@ -1,3 +1,11 @@
+# Copyright 2003-2004 by Iddo Friedberg.  All rights reserved.
+# Revisions copyright 2008-2010 by Peter Cock. All rights reserved.
+# Revisions copyright 2012 by Matt Fenwick. All rights reserved.
+# Revisions copyright 2012 by Kai Blin. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 import unittest
 from Bio.SeqUtils import ProtParam, ProtParamData
 

diff --git a/Tests/test_SwissProt.py b/Tests/test_SwissProt.py
@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+# Copyright 2009 by Michiel de Hoon.  All rights reserved.
+# Revisions copyright 2010 by Peter Cock. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 """Test for the SwissProt parser on SwissProt files.
 """
 import os

diff --git a/Tests/test_Tutorial.py b/Tests/test_Tutorial.py
@@ -1,3 +1,8 @@
+# Copyright 2011-2013 by Peter Cock.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 import unittest
 import doctest
 import os

diff --git a/Tests/test_Uniprot.py b/Tests/test_Uniprot.py
@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+# Copyright 2010 by Andrea Pierleoni
+# Revisions copyright 2010-2013 by Peter Cock.  All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
 """Test for the Uniprot parser on Uniprot XML files.
 """
 import os

diff --git a/Tests/test_align.py b/Tests/test_align.py
@@ -1,4 +1,10 @@
 #!/usr/bin/env python
+# Copyright 2000-2001 by Brad Chapman.  All rights reserved.
+# Revisions copyright 2007-2003 by Peter Cock. All rights reserved.
+# This code is part of the Biopython distribution and governed by its
+# license.  Please see the LICENSE file that should have been included
+# as part of this package.
+
 """test_align.py
 
 A script to test alignment stuff.