GitHub - bkacar/asr-pipeline: A software pipeline for aligning sequences, inferring ML phylogenies, reconstructing ancestors, and more

bkacar / asr-pipeline Public

forked from vhsvhs/asr-pipeline

A software pipeline for aligning sequences, inferring ML phylogenies, reconstructing ancestors, and more

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 145 Commits
apps		apps
ime2		ime2
setup		setup
README.md		README.md
alrt2alr.py		alrt2alr.py
argParser.py		argParser.py
asr_bayes.py		asr_bayes.py
asr_dat_to_seq.py		asr_dat_to_seq.py
asrpipelinedb.py		asrpipelinedb.py
asrpipelinedb_api.py		asrpipelinedb_api.py
aws_tools.py		aws_tools.py
clean_seqs.py		clean_seqs.py
configuration.py		configuration.py
debugTools.py		debugTools.py
errorMessages.py		errorMessages.py
fscores.py		fscores.py
html_helper.py		html_helper.py
index_mutations.py		index_mutations.py
log.py		log.py
ncbi_api.py		ncbi_api.py
phyloasr.py		phyloasr.py
phyloxml_helper.py		phyloxml_helper.py
plot_pp_distro.2.py		plot_pp_distro.2.py
plots.py		plots.py
pythoscape_tools.py		pythoscape_tools.py
read_config.py		read_config.py
run_bayes_sample.py		run_bayes_sample.py
run_msas.py		run_msas.py
runme.py		runme.py
splash.py		splash.py
struct_analysis.py		struct_analysis.py
tools.py		tools.py
write_ancestral_summary.py		write_ancestral_summary.py