re-build analysis

Rebuild the zika-colombia analysis now that the FLR clone sequences have been removed. This pushes all the new results files and JSONs up to github.
blab · Nov 19, 2018 · 3b6b97d · 3b6b97d
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commit 3b6b97d
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Showing 18 changed files with 47,863 additions and 81,125 deletions.
diff --git a/auspice/zika-colombia_meta.json b/auspice/zika-colombia_meta.json
@@ -148,97 +148,97 @@
   },
   "geo": {
     "country": {
-      "guadeloupe": {
-        "latitude": 16.265,
-        "longitude": -61.551
+      "dominican_republic": {
+        "latitude": 18.50012,
+        "longitude": -69.98857
       },
-      "french_guiana": {
-        "latitude": 4.93333,
-        "longitude": -52.33333
+      "puerto_rico": {
+        "latitude": 18.2459121,
+        "longitude": -66.4164147
       },
-      "saint_barthelemy": {
-        "latitude": 17.9049171,
-        "longitude": -62.847207
+      "honduras": {
+        "latitude": 15.0610686,
+        "longitude": -84.5978533
       },
-      "suriname": {
-        "latitude": 4.1413025,
-        "longitude": -56.0771186
+      "usvi": {
+        "latitude": 18.3378801,
+        "longitude": -64.8982827
+      },
+      "el_salvador": {
+        "latitude": 13.68935,
+        "longitude": -89.18718
+      },
+      "nicaragua": {
+        "latitude": 13.0,
+        "longitude": -85.0
+      },
+      "mexico": {
+        "latitude": 19.4325301,
+        "longitude": -99.1332101
       },
       "martinique": {
         "latitude": 14.6415,
         "longitude": -61.0242
       },
-      "honduras": {
-        "latitude": 15.0610686,
-        "longitude": -84.5978533
-      },
       "colombia": {
         "latitude": 2.893108,
         "longitude": -73.7845142
       },
-      "cuba": {
-        "latitude": 22.0,
-        "longitude": -79.5
-      },
-      "guatemala": {
-        "latitude": 15.6356088,
-        "longitude": -89.8988086
-      },
-      "peru": {
-        "latitude": -10.0,
-        "longitude": -75.25
+      "suriname": {
+        "latitude": 4.1413025,
+        "longitude": -56.0771186
       },
-      "nicaragua": {
-        "latitude": 13.0,
-        "longitude": -85.0
+      "saint_barthelemy": {
+        "latitude": 17.9049171,
+        "longitude": -62.847207
       },
       "usa": {
         "latitude": 39.7837304,
         "longitude": -100.4458824
       },
-      "el_salvador": {
-        "latitude": 13.68935,
-        "longitude": -89.18718
-      },
-      "mexico": {
-        "latitude": 19.4325301,
-        "longitude": -99.1332101
+      "american_samoa": {
+        "latitude": -14.27806,
+        "longitude": -170.7025
       },
-      "panama": {
-        "latitude": 8.3096067,
-        "longitude": -81.3066245
+      "jamaica": {
+        "latitude": 18.16667,
+        "longitude": -77.25
       },
-      "dominican_republic": {
-        "latitude": 18.50012,
-        "longitude": -69.98857
+      "ecuador": {
+        "latitude": -1.3397667,
+        "longitude": -79.3666964
       },
-      "puerto_rico": {
-        "latitude": 18.2459121,
-        "longitude": -66.4164147
+      "french_guiana": {
+        "latitude": 4.93333,
+        "longitude": -52.33333
       },
       "haiti": {
         "latitude": 19.1399952,
         "longitude": -72.3570971
       },
-      "american_samoa": {
-        "latitude": -14.27806,
-        "longitude": -170.7025
+      "guadeloupe": {
+        "latitude": 16.265,
+        "longitude": -61.551
+      },
+      "cuba": {
+        "latitude": 22.0,
+        "longitude": -79.5
+      },
+      "panama": {
+        "latitude": 8.3096067,
+        "longitude": -81.3066245
       },
       "french_polynesia": {
         "latitude": -17.6797,
         "longitude": -149.4068
       },
-      "ecuador": {
-        "latitude": -1.3397667,
-        "longitude": -79.3666964
-      },
-      "jamaica": {
-        "latitude": 18.16667,
-        "longitude": -77.25
+      "peru": {
+        "latitude": -10.0,
+        "longitude": -75.25
       },
-      "usvi": {
-        "latitude": 18.3378801,
-        "longitude": -64.8982827
+      "guatemala": {
+        "latitude": 15.6356088,
+        "longitude": -89.8988086
       },
       "brazil": {
         "latitude": -10.3333332,
@@ -250,34 +250,34 @@
       }
     },
     "region": {
-      "oceania": {
-        "latitude": -25.0562891,
-        "longitude": 152.008576
-      },
       "south_america": {
         "latitude": -13.083583,
         "longitude": -58.470721
       },
       "north_america": {
         "latitude": 28.2367447,
         "longitude": -97.738017
+      },
+      "oceania": {
+        "latitude": -25.0562891,
+        "longitude": 152.008576
       }
     }
   },
   "defaults": {
     "mapTriplicate": true
   },
   "maintainer": [
-    "Trevor Bedford",
-    "http://bedford.io/team/trevor-bedford/"
+    "Alli Black",
+    "https://bedford.io/team/allison-black/"
   ],
   "filters": [
     "country",
     "region",
     "authors"
   ],
-  "updated": "15 Oct 2018",
-  "virus_count": 386,
+  "updated": "19 Nov 2018",
+  "virus_count": 360,
   "author_info": {
     "Pettersson": {
       "n": 13
@@ -312,9 +312,6 @@
     "Leguia": {
       "n": 6
     },
-    "Pickett": {
-      "n": 37
-    },
     "Lednicky": {
       "n": 2
     },