-
Notifications
You must be signed in to change notification settings - Fork 3
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
R install failure #7
Comments
Hi Justin, It looks like devtools is having a hard time installing the package Before you install phrapl, perhaps try installing binom alone first by install.packages("binom",repos="http://cran.rstudio.com") Then install phrapl using the devtools command. Let me know if this doesn't Thanks, Nathan On Fri, Aug 19, 2016 at 10:24 AM, Justin C. Bagley <notifications@github.com
|
Dear Nathan, Thanks very much for the quick response. I tried your suggestion and it
The downloaded binary packages are in
Error: Don't know how to decompress files with extension 6.3 Can you think of anything else to try? Thanks for your help. Best, Justin Justin C. Bagley, Ph.D. On Fri, Aug 19, 2016 at 2:06 PM, Nathan D Jackson notifications@github.com
|
Hi Justin, It looks like the same thing is happening, but with another phrapl if(!require("ape")){install.packages("ape",repos="http://cran.rstudio.com")} Then install phrapl. I'm not sure if this is just a local problem or a more Let me know if you have any other issues. Thanks for trying out phrapl! Nathan On Fri, Aug 19, 2016 at 11:21 AM, Justin C. Bagley <notifications@github.com
|
Sorry, I made a mistake with the last three installation calls. Here's the if(!require("ape")){install.packages("ape",repos="http://cran.rstudio.com")} On Fri, Aug 19, 2016 at 11:35 AM, Nathan Jackson ndjaxon@gmail.com wrote:
|
Dear Nathan, I gave this another go today. Following your suggestion to pre-install
Installing rgenoud '/private/var/folders/qy/50knq60d42z3gwjxhx0gm8bc0000gn/T/RtmpkZhAtz/devtoolsa4d82124d81c/rgenoud' --library='/Library/Frameworks/R.framework/Versions/3.3/Resources/library'
'/private/var/folders/qy/50knq60d42z3gwjxhx0gm8bc0000gn/T/RtmpkZhAtz/devtoolsa4d865971217/bomeara-phrapl-688acb1' --library='/Library/Frameworks/R.framework/Versions/3.3/Resources/library'
Despite the install success, I am now stuck in the initial stages of a
My input data are separate gene trees for each of 227 SNP loci from a Thanks for your help. Best, Justin Justin C. Bagley, Ph.D. On Fri, Aug 19, 2016 at 2:41 PM, Nathan D Jackson notifications@github.com
|
Hi Justin, I'm not certain what the problem is. Can you send me your tree file and Nathan On Sun, Aug 21, 2016 at 9:37 PM, Justin C. Bagley notifications@github.com
|
Dear Nathan, Thanks for agreeing to take a look at this. Here I'm attaching the files I Justin Justin C. Bagley, Ph.D. On Mon, Aug 22, 2016 at 1:12 PM, Nathan D Jackson notifications@github.com
TipSample Assignment |
Can you send me your "Hyp_besttrees.tre" file as well? Nathan On Mon, Aug 22, 2016 at 10:51 AM, Justin C. Bagley <notifications@github.com
|
Hi, it was attached! Here it is again. Best, Justin Justin C. Bagley, Ph.D. On Mon, Aug 22, 2016 at 2:37 PM, Nathan D Jackson notifications@github.com
|
Hmm, for some reason the attachments aren't coming through. Could you Thanks! Nathan On Mon, Aug 22, 2016 at 11:45 AM, Justin C. Bagley <notifications@github.com
|
Hi Justin, Any locus must include at least enough samples per population/species to If you toss all loci that do not meet the minimum sampling requirements of Let me know if you run across any additional snags. Nathan On Mon, Aug 22, 2016 at 11:50 AM, Nathan Jackson ndjaxon@gmail.com wrote:
|
Dear Nathan, Thanks very much, but I also am not receiving the attachments, so please Best, Justin Justin C. Bagley, Ph.D. On Tue, Aug 23, 2016 at 3:36 AM, Nathan D Jackson notifications@github.com
|
Right, sorry. I'll send those to you directly. On Tue, Aug 23, 2016 at 4:41 AM, Justin C. Bagley notifications@github.com
|
Hi Brian,
I'm using OSX 10.11.16, R v3.2.1, and I am having an issue with the PHRAPL install. When I follow your instructions, I get an error apparently due to failure to unpack a file with a name ending in "-1":
In response, I downloaded the master dir and tried to use devtools to install locally, but this also failed:
Please help me find a solution to this so I can start working with PHRAPL.
Thanks.
Best,
Justin
The text was updated successfully, but these errors were encountered: