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problem “Could not parse the header line” #246

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C-YONG opened this issue Jul 13, 2024 · 1 comment
Open

problem “Could not parse the header line” #246

C-YONG opened this issue Jul 13, 2024 · 1 comment

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@C-YONG
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C-YONG commented Jul 13, 2024

image
code:smoove genotype -d -x -p 20 --name 432-joint --outdir ./ --fasta ../../03_genome/genome1.3.fna --vcf merged.sites.vcf.gz ../.
./04_bam/432.sort.bam
When i run the above code, i get this report, does it affetc the results? Is it an error? In fact, it can out put the results.

@brentp
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brentp commented Jul 15, 2024

looks like it worked but you might look into why you have that odd field in the header.

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