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1. UKB_knee_segmentation UKB_knee_segmentation Public

   Image segmentation models and scripts for extracting clinically relevant measurements from segments: AP knee DXA scan images

   Jupyter Notebook 1

2. dxaconv dxaconv Public

   Convert DICOM files from DXA scans to other image formats, and parse the corresponding metadata files

   Python 4

3. atxsatscan atxsatscan Public

   Determining COVID-19 case burden from discrete Poisson spatial scan statistic

   HTML 1 1

4. DL-PyTorch-Notes DL-PyTorch-Notes Public

   Notes from diving deep into PyTorch for Deep Learning: General Concepts with Code

   Jupyter Notebook

5. sars-pango sars-pango Public template

   SARS-CoV-2 strain identification and phylogenetic analysis pipeline

   Python

6. cellxgene_handlers cellxgene_handlers Public

   Utility scripts for processing high dimensional data from the CZI CELLxGENE dataset

   Python