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Hi, I use funcotator to call somatic mutations as below:
gatk Funcotator \ -R $ref/Homo_sapiens_assembly38.fasta \ -V ../${array[1]}.filter.vcf \ -O ${array[1]}.maf \ --output-file-format MAF \ --data-sources-path Funcotator_data/funcotator_dataSources.v1.7.20200521s/ \ --ref-version hg38 \ --annotation-default tumor_barcode:${array[1]} \ --annotation-default normal_barcode:${array[0]} done
Can funcotator remove the mutation data in dbsnp by default? or I need extra removal? Is there a parameter to remove these mutations? Thanks!
The text was updated successfully, but these errors were encountered:
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Hi, I use funcotator to call somatic mutations as below:
Can funcotator remove the mutation data in dbsnp by default? or I need extra removal? Is there a parameter to remove these mutations?
Thanks!
The text was updated successfully, but these errors were encountered: