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add cram to testresources #1781

Merged
merged 3 commits into from
Apr 27, 2016
Merged

add cram to testresources #1781

merged 3 commits into from
Apr 27, 2016

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akiezun
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@akiezun akiezun commented Apr 27, 2016

adding cram version of our main test bam

@lbergelson, ok?

@lbergelson
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@akiezun 👍 Lets wait for tests though just in case something horrible happens.

@lbergelson lbergelson assigned akiezun and unassigned lbergelson Apr 27, 2016
@cmnbroad
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We might want to reconsider using a .crai file as an index (see samtools/htsjdk#531 and samtools/hts-specs#146). At this point, I would use a .bai (generate the .cram using GATK to get the .bai). It would also be interesting to know if the HC perf is any different using the .bai generated this way.

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coveralls commented Apr 27, 2016

Coverage Status

Coverage remained the same at 82.532% when pulling 9e43517 on ak_add_cram_to_testresources into 7ac2181 on master.

@akiezun akiezun merged commit 602a578 into master Apr 27, 2016
@akiezun akiezun deleted the ak_add_cram_to_testresources branch April 27, 2016 21:03
@droazen
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droazen commented Apr 27, 2016

Someone didn't squash and now owes everyone beer :)

@akiezun
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akiezun commented Apr 27, 2016

hmm, maybe github does - the button said "confirm squash and merge"

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coveralls commented Apr 27, 2016

Coverage Status

Coverage remained the same at 82.532% when pulling f3c05f2 on ak_add_cram_to_testresources into 7ac2181 on master.

@droazen
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droazen commented Apr 27, 2016

You're right, github did it for you -- the wonders of the modern age!

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5 participants