creating a new tool to compare interval lists #3702
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jonn-smith
reviewed
Oct 17, 2017
| final GenomeLocParser genomeLocParser = new GenomeLocParser(samSequenceDictionary); | ||
| final GenomeLocSortedSet firstIntervals = getGenomeLocs(genomeLocParser, firstIntervalFile); | ||
| final GenomeLocSortedSet secondIntervals = getGenomeLocs(genomeLocParser, secondIntervalFile); | ||
| final String result = IntervalUtils.equateIntervals(firstIntervals.toList(), secondIntervals.toList()); |
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What happens if the interval files are both empty?
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Seems to be fine - added some tests to this effect and they behave as expected.
jonn-smith
requested changes
Oct 17, 2017
Codecov Report
@@ Coverage Diff @@
## master #3702 +/- ##
============================================
+ Coverage 87.08% 87.09% +<.01%
- Complexity 31522 31531 +9
============================================
Files 1930 1932 +2
Lines 145236 145271 +35
Branches 16096 16099 +3
============================================
+ Hits 126480 126519 +39
+ Misses 12903 12900 -3
+ Partials 5853 5852 -1
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adding a very simple tool to compare two interval list files