Bump protobuf from 3.15.7 to 3.18.3 in /model_zoo/PCLR #496
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* notebook for cleaning, plotting 12-lead ecgs
* added dicom tensors and brain volume and coarse_rhythm tensor maps and removed nonexistent disks
tensor merge errors, add brain tensors
long axis tensor maps and coarse ecg rhythm classifications
* Some resources deleted, which broke launch script. Now fixed, merge errors, add downsampled and 3d conv brain tensors
* added exercise ecg notebooks, exercise ecg tensorization, simple exercise ecg tmaps
* Updates the downloader tool to default 10 conconcurrent connections, which is the max that the UK Biobank now permits per project. Also changes the sort order to be more GCSFuse friendly - rather than checking every file, once it finds a file that does not yet exist, it will assume that every subsequent file also needs to be downloaded. * Actually implement the error retry that the code claims it does.
Adds flair and susceptibility tensorization and nifti tensorization
* tensor from file introduced with default option as previous version, merge is more verbose
recovery channel always had 2 leads full of zeros :(
Adds optimizer option using keras default optimizers and RAdam. Also includes Lookahead optimizer.
* refactored bike ecg tensorization, added function to write to hd5 depending on source and type
inference on categorical predictions, mixup and mixup notebook
Add counts to ROC curves
adds dilation, separable, and depth-wise convolutions, and tracks all layers in a dictionary.
Switches tensor path order to `source/dtype/name/date`, adds more data to exercise ecgs
Bike ecg tensorization made too many nans
add brain volumes, refactor dataset from meaning
New file: `tensor_from_file.py`. Tensor reading closely connected to tensor writing!
* fix VAE notebook, add cifar and MRI slice VAEs
new model factory, cleanup notebooks
* Correctly (hopefully) tensorize full bike ecg
* Simple error stats now get recounted for every true epoch
* Hyperparameter optimization code update with improved plotting
* test csv and more brain tmaps
* siamese models with random categorical task verification
* Added extraction of R and S amplitudes from XML during tensorization * Added TMAPS to compute LVH criteria from amplitudes (new notebook for testing) * Added plotting functionality for 12-lead resting ECGs including median waveforms and R S amplitudes
* dockerfile requirements file munging * brief explanation of the changes * hmm, testing changing workdir to '/' * pin ipyannotations == 0.2.1
* bump the docker image versions for the Terra notebooks * typo fix
* update notebooks
adding silhouette code to the zoo
Also ran pre-commit which is responsible for most of the changes.
Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.3.0 to 2.5.2. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](tensorflow/tensorflow@v2.3.0...v2.5.2) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.4 to 1.26.5. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](urllib3/urllib3@1.26.4...1.26.5) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…474) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.0 to 2.5.2. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](tensorflow/tensorflow@v2.5.0...v2.5.2) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [numpy](https://github.com/numpy/numpy) from 1.20.2 to 1.21.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](numpy/numpy@v1.20.2...v1.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pillow from 8.2.0 to 9.0.0 in /docker/vm_boot_images/config Bumps [pillow](https://github.com/python-pillow/Pillow) from 8.2.0 to 9.0.0. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@8.2.0...9.0.0) --- updated-dependencies: - dependency-name: pillow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Bump pillow from 8.2.0 to 9.0.0 in /docker/vm_boot_images/config Bumps [pillow](https://github.com/python-pillow/Pillow) from 8.2.0 to 9.0.0. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@8.2.0...9.0.0) --- updated-dependencies: - dependency-name: pillow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * start * start * start Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Samuel Friedman <lucidtronix@gmail.com>
* Update to python >= 3.7 as well
Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst) - [Commits](numpy/numpy@v1.21.0...v1.22.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.2 to 2.7.2. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](tensorflow/tensorflow@v2.5.2...v2.7.2) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* add dropfuse readme
Changes include: * use a setup notebook instead of a custom Terra Docker image now that the setup is more straightforward * use a newer version of Facets to gain some bug fixes * update to newer module import paths for ipyannotations
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.15.7 to 3.18.3. - [Release notes](https://github.com/protocolbuffers/protobuf/releases) - [Changelog](https://github.com/protocolbuffers/protobuf/blob/main/generate_changelog.py) - [Commits](protocolbuffers/protobuf@v3.15.7...v3.18.3) --- updated-dependencies: - dependency-name: protobuf dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com>
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OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting If you change your mind, just re-open this PR and I'll resolve any conflicts on it. |
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Bumps protobuf from 3.15.7 to 3.18.3.
Release notes
Sourced from protobuf's releases.
... (truncated)
Commits
a902b39No-op whitespace changeae62acdUpdating version.json and repo version numbers to: 18.3f43ac49Merge pull request #10542 from deannagarcia/3.18.x9efdf55Add missing includesd1635e1Apply patch5b37c91Update version.json with "lts": true (#10534)c39d622Merge pull request #10529 from protocolbuffers/deannagarcia-patch-5f77d3b6Update version.json8178b06Merge pull request #10503 from deannagarcia/3.18.x24ca839Add version fileDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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