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Support cloud input/output for IntervalListTools #1852

Merged
merged 28 commits into from
Jul 20, 2023
Merged

Support cloud input/output for IntervalListTools #1852

merged 28 commits into from
Jul 20, 2023

Commits on Jul 6, 2023

  1. preliminary investigations

    @takutosato
    takutosato committed Jul 6, 2023
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  2. input change first pass

    @takutosato
    takutosato committed Jul 6, 2023
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  3. clean up

    @takutosato
    takutosato committed Jul 6, 2023
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  4. make output cloud friendly

    @takutosato
    takutosato committed Jul 6, 2023
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  5. fixes

    @takutosato
    takutosato committed Jul 6, 2023
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  6. tweak

    @takutosato
    takutosato committed Jul 6, 2023
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  7. output directory

    @takutosato
    takutosato committed Jul 6, 2023
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  8. let's see

    @takutosato
    takutosato committed Jul 6, 2023
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  9. come on

    @takutosato
    takutosato committed Jul 6, 2023
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  10. support test

    @takutosato
    takutosato committed Jul 6, 2023
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  11. tests written, proofread then good to go

    @takutosato
    takutosato committed Jul 6, 2023
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  12. proofread and add a test

    @takutosato
    takutosato committed Jul 6, 2023
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  13. part of review edits

    @takutosato
    takutosato committed Jul 6, 2023
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  14. port some needed code from GATK

    @takutosato
    takutosato committed Jul 6, 2023
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  15. tests are succeeding

    @takutosato
    takutosato committed Jul 6, 2023
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  16. proofreading

    @takutosato
    takutosato committed Jul 6, 2023
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  17. question

    @takutosato
    takutosato committed Jul 6, 2023
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Commits on Jul 10, 2023

  1. count output in the cloud

    @takutosato
    takutosato committed Jul 10, 2023
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Commits on Jul 11, 2023

  1. refactored tests

    @takutosato
    takutosato committed Jul 11, 2023
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  2. more changes

    @takutosato
    takutosato committed Jul 11, 2023
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  3. clean up

    @takutosato
    takutosato committed Jul 11, 2023
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Commits on Jul 12, 2023

  1. louis

    @takutosato
    takutosato committed Jul 12, 2023
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  2. typo

    @takutosato
    takutosato committed Jul 12, 2023
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  3. ooops

    @takutosato
    takutosato committed Jul 12, 2023
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  4. hopefully last one

    @takutosato
    takutosato committed Jul 12, 2023
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Commits on Jul 14, 2023

  1. louis2

    @takutosato
    takutosato committed Jul 14, 2023
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Commits on Jul 17, 2023

  1. somehow it needs to be done this way

    @takutosato
    takutosato committed Jul 17, 2023
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Commits on Jul 19, 2023

  1. remove comment

    @takutosato
    takutosato committed Jul 19, 2023
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