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### 2022

_A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research._
Xinsong Du, Juan J Aristizabal-Henao, Timothy J Garrett, Mathias Brochhausen, William R Hogan, Lemas DJ
Metabolites. 2022.

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PMID: 35050209

    <li><a href="https://www.mdpi.com/2218-1989/12/1/87" alt="Alternative Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Peripartum women’s perspectives on research study participation in the OneFlorida Clinical Research Consortium._
Ke Xu, Chu Hsiao, Hailey Ballard, Nisha Chachad, Thu Kim, Callie Reeder, Elizabeth A Shenkman, Lemas DJ
American Journal of Obstetrics & Gynecology. 2022.

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    <li><a href="https://www.ajog.org/article/S0002-9378(21)02254-7/fulltext" alt="Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Maternal gut microbiome during the lactational period._
Adetola F Louis-Jacques, Lemas DJ, Ke Xu, Shaheda Urmi, Maureen Groer
American Journal of Obstetrics & Gynecology. 2022.

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    <li><a href="https://www.ajog.org/article/S0002-9378(21)01264-3/fulltext" alt="Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Smoking during pregnancy, birth outcomes, and discordance between biomarker and self-reported smoking status._
Jaclyn M Hall, Lemas DJ, HeeDeok Cho, Mildred Maldonado-Molina, Tony S Wen, Elizabeth A Shenkman
American Journal of Obstetrics & Gynecology. 2022.

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    <li><a href="https://www.ajog.org/article/S0002-9378(21)02066-4/fulltext" alt="Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Host-microbial interactions in the lactational period using antibiotic depleted specific pathogen free mice model._
Adetola F Louis-Jacques, Sarah Sniffen, Shaheda Urmi, Maureen Groer, Lemas DJ
American Journal of Obstetrics & Gynecology. 2022.

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    <li><a href="https://www.ajog.org/article/S0002-9378(21)01715-4/fulltext" alt="Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

2021

_County-level Analysis of Perinatal Health Indicators Within a Single Health System Catchment._
Lemas DJ, Claire Layton, Hailey Ballard, Ke Xu, John C Smulian, Matthew Gurka, Matthew Shane Loop, Erica L Smith, Callie F Reeder, Adetola Louis-Jacques, Chu J Hsiao, Nicole Cacho, Jaclyn Hall
UFHPCA . 2021.

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    <li><a href="file:///C:/Users/emman/AppData/Local/Temp/64b72faf-fa7f-4c06-a998-cfe6f12392c4.pdf" alt="Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Urinary Metabolomic Analysis of Diverse Adolescent Girls with Overweight/Obesity._
Xinsong Du, Michelle Cardel, Darci Miller, Juan Aristizabal Henao, John Bowden, Lemas DJ
OBESITY. 2021.

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PMID: 33472584

    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Perspectives of pregnant and breastfeeding women on longitudinal clinical studies that require non-invasive biospecimen collection–a qualitative study._
Lemas DJ, Lauren Wright, Elizabeth Flood-Grady, Magda Francois, Lynn Chen, Austen Hentschel, Xinsong Du, Chu J Hsiao, Huan Chen, Josef Neu, Ryan P Theis, Elizabeth Shenkman, Janice Krieger
BMC pregnancy and childbirth. 2021.

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PMID: 33472584

    <li><a href="https://link.springer.com/article/10.1186/s12884-021-03541-x" alt="Alternative Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Using machine learning analysis to assist in differentiating between necrotizing enterocolitis and spontaneous intestinal perforation: a novel predictive analytic tool._
Allison C Lure, Xinsong Du, Erik W Black, Raechel Irons, Lemas DJ, Janice A Taylor, Orlyn Lavilla, Diomel de la Cruz, Josef Neu
Journal of Pediatric Surgery. 2021.

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PMID: 33342603

    <li><a href="https://www.sciencedirect.com/science/article/abs/pii/S002234682030837X" alt="Alternative Link">Full Text</a></li>
    
    
    
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    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Metabolomic Profiling of Biological Reference Materials using a Multiplatform High-Resolution Mass Spectrometric Approach._
Juan J Aristizabal-Henao, Lemas DJ, Emily K Griffin, Kaylie Anne Costa, Camden Camacho, John A Bowden
Journal of the American Society for Mass Spectrometry. 2021.

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PMID: 34388338

    <li><a href="https://pubs.acs.org/doi/abs/10.1021/jasms.1c00194" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Association between atopic dermatitis and race from infancy to early childhood: a retrospective cohort study._
Reesa L Monir, Jennifer J Schoch, Cynthia W Garvan, Josef Neu, Lemas DJ
International Journal of Dermatology. 2021.

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PMID: 34378189

    <li><a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/ijd.15805" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Acceptability of Research and Health Care Visits During the COVID-19 Pandemic: Cross-sectional Survey Study._
Kathryn M Ross, Young-Rock Hong, Rebecca A Krukowski, Darci R Miller, Lemas DJ, Michelle I Cardel
JMIR formative research. 2021.

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PMID: 34033577

    <li><a href="https://formative.jmir.org/2021/6/e27185/" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Implications of the vaginal microbiome and potential restorative strategies on maternal health: a narrative review._
Olivia Moumne, Mary E Hampe, Diana Montoya-Williams, Tiffany L Carson, Josef Neu, Magda Francois, Alice Rhoton-Vlasak, Lemas DJ
Journal of Perinatal Medicine. 2021.

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PMID: 33385644

    <li><a href="https://www.degruyter.com/document/doi/10.1515/jpm-2020-0367/html?lang=de" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Estimating drug consumption during a college sporting event from wastewater using liquid chromatography mass spectrometry._
Lemas DJ, Mathew Shane Loop, Michelle Duong, Andrew Schleffer, Clark Collins, John Alfred Bowden, Xinsong Du, Keval Patel, Austin L Ciesielski, Zach Ridge, Jarrad Wagner, Bikram Subedi, Chris Delcher
Science of the total environment. 2021.

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PMID: 33385644

    <li><a href="https://www.sciencedirect.com/science/article/abs/pii/S0048969720374945" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Perspectives of Pregnant and Breastfeeding Women on Participating in Longitudinal Mother-Baby Studies Involving Electronic Health Records: Qualitative Study._
Austen Hentschel, Chu J Hsiao, Lynn Y Chen, Lauren Wright, Jennifer Shaw, Xinsong Du, Elizabeth Flood-Grady, Christopher A Harle, Callie F Reeder, Magda Francois, Adetola Louis-Jacques, Elizabeth Shenkman, Janice L Krieger, Lemas DJ
JMIR Pediatrics and Parenting. 2021.

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PMID: 33666558

    <li><a href="https://pediatrics.jmir.org/2021/1/e23842" alt="Alternative Link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Degree of Cardiometabolic Risk Factor Normalization in Individuals Receiving Bariatric Surgery: Evidence from NHANES 2015-2018._
Young-Rock Hong, Aaron S Kelly, Crystal Johnson-Mann, Lemas DJ, Michelle I Cardel
Diabetes care. 2021.

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PMID: 33431421

    <li><a href="https://diabetesjournals.org/care/article/44/3/e57/138701" alt="Alternative link">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Duration of neonatal intensive care unit exposure associated with decreased risk of atopic dermatitis._
Jeniffer J Schoch, Nicole Miranda, Cynthia W Garvan, Reesa L Monir, Josef Neu, Lemas DJ
Pediatric Dermatology. 2021.

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PMID: 33063877

    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

2020

_A Qualitative Study of Pregnant Women's Perspectives on Antibiotic Use for Mom and Child: Implications for Developing Tailored Health Education Interventions._
Lynn Y Chen, Elizabeth Flood-Grady, Austen Hentschel, Lauren Wright, Rahma Mkuu, Alyson Young, Magda Francois, Josef Neu, Leslie A Parker, Elizabeth Shenkman, Janice L Krieger, Lemas DJ
Antibiotics. 2020.

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PMID: 33076539

    <li><a href="https://www.mdpi.com/2079-6382/9/10/704/pdf" alt="PDF">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

COVID‐19 Impacts Mental Health Outcomes and Ability/Desire to Participate in Research Among Current Research Participants._
Michelle I. Cardel, Stephanie Manasse, Rebecca A. Krukowski, Kathryn Ross, Rebecca Shakour, Darci R. Miller, Young‐Rock Hong Lemas DJ.
Obesity Society. 2020.

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PMID: 32845582

    <li><a href="https://onlinelibrary.wiley.com/doi/full/10.1002/oby.23016" alt="PDF">Full Text</a></li>
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

_Predicting In-hospital Mortality of Patients with Febrile Neutropenia Using Machine Learning Models._
Du X, Min J, Shah CP, Bishnoi R, Hogan WR, Lemas DJ.
International Journal of Medical Informatics. 2020.

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PMID: 32325370

    <li><a href="https://pubmed.ncbi.nlm.nih.gov/32325370/" alt="PDF">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

    <li><a href="https://github.com/XinsongDu/FN_Mortality" alt="Code website">Code</a></li>

_Postnatal pediatric systemic antibiotic episodes during the first three years of life are not associated with mode of delivery._
Lemas DJ, Mack JA, Schoch JJ, Cacho N, Plasencia E, Rhoton-Vlasak AS, Neu J, Thompton L, Francois M, Patel K, Hogan WR, Lipori GP, Gurka MJ.
Plos One. 2020.

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PMID: 32130278

    <li><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7055886/" alt="PDF">Full Text</a></li>
    
    
    
    <strong>Additional Links</strong>
    
    <li><a href="https://hobi.med.ufl.edu/" alt="Department website">UF HOBI</a></li>

    <li><a href="https://ufhealth.org/research-study/breastfeeding-and-early-child-health-beach-study" alt="BEACH Study website">BEACH Study</a></li>

2019

Initial microbial community of the neonatal stomach immediately after birth
Bajorek S, Parker L, Li N, Winglee K, Weaver M, Johnson J, Sioda M, Gauthier J, Lemas DJ, Jobin C, Lorca G, Neu J, Fodor AA.
Gut Microbes. 2019. PMID: 30404568

Taq1a polymorphism (rs1800497) is associated with obesity-related outcomes and dietary intake in a multi-ethnic sample of children
Cardel M, Lemas DJ, Lee A, Miller D, Huo T, Klimentidis Y, Fernandez J
Pediatric Obesity. 2018. PMID: 30253082

Objectively measured pediatric obesity prevalence using the OneFlorida Clinical Research Consortium
Lemas DJ, Cardel M, Filipp SL, Hall J, Essner RZ, Smith SR, Nadglowski J, Donahoo WT, Cooper-DeHoff RM, Nelson DR, Hogan WR, Shenkman EA, Gurka MJ, Janicke DM
Obesity Research and Clinical Practice. 2019. PMID: 30391132

2018

The gut microbiome in infants of obese mothers increases susceptibility to obesity and NAFLD in germ-free mice
Soderborg TK, Clark SE, Mulligan CE, Janssen RC, Babcock L, Lemas DJ, Johnson LK, Weir T, Lenz LL, Frank DN, Hernandez TL, Kuhn KA, D’Alessandro A, Barbour LA, El Kasmi KC, Friedman JE
Nature Communications. 2018. PMID: 30367045

Characterization of Adult Obesity in Florida Using the OneFlorida Clinical Research Consortium
Filipp SL, Cardel M, Hall J, Essner RZ, Lemas DJ, Janicke D, Smith SR, Nadglowski, Donahoo WT, Cooper-DeHoff RM, Nelson DR, Hogan WR, Shenkman EA, Gurka MJ
Obesity Science and Practice. 2018. 15;4(4):308-317 PMID: 30151226

The neonatal microbiome and its partial role in mediating the association between birth by cesarean section and adverse pediatric outcomes
Montoya-Williams D, Lemas DJ, Spirdya L, Patel K, Carney O, Neu J, Carson TL
Neonatology. 2018. 114(2): 103-111. PMID: 29788027

2017

Personalizing the microbiota of donor human milk with mother’s own milk
Cacho NT, Harrison N, Parker L, Padgett KA, Lemas DJ, Marcial G, Li N, Carr L, Neu J, Lorca GL
Frontiers in Microbiology. 2017. 8:1470. PMID: 28824595

What are optimal cesarean section rates in the U.S. and how do we get there? A review of evidence-based recommendations and interventions
Montoya-Williams D, Lemas DJ, Spirdya L, Patel K, Neu J, Carson TL
Journal of Women’s Health. 2017. 26(12): 1285-1291. PMID: 28825512

Reply to M Gotteland and F Magne
Friedman JE, Young BE, Lemas DJ, Barbour LA, Frank DN, Santorico SA
American Journal of Clinical Nutrition. 2017. 105(1):234-236. PMID: 28049665

Early infant adiposity deposition is positively associated with human milk omega-6 to omega-3 fatty acid ratio independent of maternal BMI
Rudolph MC, Young BE, Lemas DJ, Palmer CE, Hernandez T, Barbour LA, Friedman JE, Krebs NS, MacLean PS
International Journal of Obesity. 2017. 41(4):510-517. PMID: 27876761

2016

Linkage and association analysis of circulating vitamin D and parathyroid hormone identifies novel loci in Alaska Native Yup'ik people
Aslibekyan S, Vaughan LK, Wiener HW, Hidalgo BA, Lemas DJ, O’Brien DM, Hopkins SE, Stanhope KL, Havel PJ, Thummel KE, Boyer BB, Tiwari HK
Genes & Nutrition. 2016. 11:23 PMID: 27579147

Polymorphisms in stearoyl CoA desaturase and sterol regulatory element binding protein interact with n-3 polyunsaturated fatty acid intake and modify genetic associations with obesity-related anthropometric and metabolic phenotypes in Yup’ik people
Lemas DJ, Klimentidis YC, Aslibekyan S, Wiener HW, O’Brien DM, Hopkins SE, Stanhope KL, Havel PJ, Allison DB, Fernandez JR, Tiwari HK, Boyer BB
Molecular Nutrition and Food Research. 2016. 60(12):2642-2653. PMID: 27467133

Exploring the contribution of maternal antibiotics and breastfeeding to the development of the infant microbiome and pediatric obesity
Lemas DJ, Yee Shanique, Cacho N, Miller D, Cardel M, Gurka M, Janicke D, Shenkman E
Seminars in Fetal and Neonatal Medicine. 2016. 21(6):406-409. PMID: 27424917

Alterations in in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome
Lemas DJ, Young BE, Baker PR, Tomczik A, Soderborg T, Hernandez T, De la Houssaye B, Robertson CE, Rudolph M, Ir D, Patinkin Z, Krebs NJ, Santorico SA, Weir T, Barbour LA, Frank DN, Friedman JE
American Journal of Clinical Nutrition. 2016. 103(3):1291-1300. PMID 27140533

Intrinsic disorder and multiple phosphorylations constrain the evolution of the flightin N-terminal region
Lemas DJ, Lekkas P, Ballif BA, Vigoreaux JO
Journal of Proteomics. 2016. 135:191-200. PMID 26691840

2015

Higher Intake of PUFAs Is Associated with Lower Total and Visceral Adiposity and Higher Lean Mass in a Racially Diverse Sample of Children
Cardel M, Lemas DJ, Jackson KH, Friedman JE, Fernandez JR
Journal of Nutrition. 2015. 145(9):2146-2152. PMID: 26269238

Associations of maternal weight status prior and during pregnancy with neonatal cardio-metabolic markers at birth: The Healthy Start Study
Lemas DJ, Brinton JT, Shapiro, ALB, Friedman JE, Glueck DH, Dabelea D
International Journal of Obesity. 2015. 39(10)1437-1442. PMID: 26055075

Linkage and association analysis of obesity traits reveals novel loci and interactions with dietary n-3 fatty acids in an Alaska Native (Yup'ik) population
Vaughn LK, Wiener HW, Aslibekyan S, Allison DB, Havel PJ, Stanhope KL, O'Brien DM, Hopkins SE, Lemas DJ, Boyer BB, Tiwari HK
Metabolism. 2015. 64(6):689-697. PMID: 25772781

2014

CDKAL1 and HHEX are associated with type-2 diabetes-related traits among Yup'ik people
Klimentidis YC, Lemas DJ, Wiener HW, O’Brien DM, Hopkins S, Allison DB, Fernandez JR, Tiwari HK, Boyer BB
Journal of Diabetes. 2014. 6(3):251-259. PMID: 24112421

_

2013

Evidence for novel genetic loci associated with metabolic traits in Yup’ik people
Aslibekyan S, Vaughn LK, Wiener HW, Lemas DJ, Klimentidis YC, Havel PJ, Stanhope KL, O’Brien DM, Boyer BB, Tiwari HK
American Journal for Human Biology. 2013. 25(5):673-680. PMID: 23907821

Obesity polymorphisms identified in genome-wide association studies interact with n-3 polyunsaturated fatty acids and modify genetic associations with adiposity phenotypes in Yup’ik people
Lemas DJ, Klimentidis YC, Wiener HW, O’Brien DM, Hopkins S, Allison DB, Fernandez JR, Tiwari HK, Boyer BB. Genes & Nutrition. 2013. 8(5):495-505. PMID: 23526194

2012

Genetic polymorphisms in carnitine palmitoyltransferase 1A gene are associated with variation in body composition and fasting lipid traits in Yup’ik Eskimos
Lemas DJ, Wiener HW, O’Brien DM, Hopkins S, Stanhope KL, Havel PJ, et al.
Journal of Lipid Research. 2012. 53(1):175–184. PMID: 22045927

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The documents listed here are available for downloading and have been provided as a means to ensure timely dissemination of scholarly and technical work on a noncommercial basis. Copyright and all rights therein are maintained by the authors or by other copyright holders, notwithstanding that they have offered their works here electronically. It is understood that all persons copying this information will adhere to the terms and constraints invoked by each author's copyright. These works may not be re-posted without the explicit permission of the copyright holder.

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