This is intended to be a set of script which will allow a user to take fastq and or fasta files through to final analysis, with plot production. The programmes used will be selected for their accessibility (free and open source) and the majority of these scripts will be following the guidelines set out by DIYTranscriptomics.com
Programmes required:
- R
- RStudio
- Sublime text editor
- Trimmomatic
- Trinity
Command line programmes:
- kallisto (access to Path file)
- fastQc (access to Path file)
- MultiQC (access to Path file)