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MetaMap Facade #2

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michelole opened this issue Mar 13, 2018 · 1 comment
Open

MetaMap Facade #2

michelole opened this issue Mar 13, 2018 · 1 comment
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See https://github.com/bst-mug/reassess/blob/master/src/main/java/at/medunigraz/imi/reassess/conceptmapper/metamap/MetaMapLiteFacade.java
@michelole michelole mentioned this issue Mar 26, 2018
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@michelole michelole self-assigned this Apr 6, 2018
@michelole michelole mentioned this issue Apr 18, 2018
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michelole added a commit to michelole/n2c2 that referenced this issue Apr 19, 2018
@michelole
Add MetaMapLite support (fixes bst-mug#2)
ed07e87 
MetaMapLite (https://metamap.nlm.nih.gov/MetaMapLite.shtml) is not FOSS, but a free UMLS license can be obtained on the website https://utslogin.nlm.nih.gov/cas/login.

The current pom.xml points to a private Maven repository with pre-compiled JARs, but one can use their local repository using the MetaMapLite instructions for "Using Maven" (https://metamap.nlm.nih.gov/Docs/README_MetaMapLite_3.1.html).

OpenNLP models, the index directory and the termsfile required by MetaMapLite are also available on the MetaMapLite distribution and should be set on this project's metamaplite.properties.
@michelole michelole mentioned this issue Apr 26, 2018
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@michelole michelole added the on hold Waiting an external event label May 2, 2018
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Code is ready at #51, but not merged due to increased code complexity. Will merge if needed only.

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