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h2 is negative -1.105 #38

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argossy opened this issue Oct 23, 2015 · 1 comment
Closed

h2 is negative -1.105 #38

argossy opened this issue Oct 23, 2015 · 1 comment

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@argossy
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argossy commented Oct 23, 2015

Hi
my h2 estimate is negative (shown below). I didn't have any issue during data munging. So I don't know what's wrong. BTW, my sample size is 300+, do you think is it too small for estimating heritability or genetic correlation? Thank you

Total Observed scale h2: -1.105 (1.5709)
Lambda GC: 1.0436
Mean Chi^2: 1.0409
Intercept: 1.0478 (0.0093)
Ratio: 1.1669 (0.2275)

@bneale
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bneale commented Oct 23, 2015

Hi

Yes - with only 300 samples you're extremely underpowered for this kind of
analysis as you need sufficient sample size to start to expose the
polygenic effects on the trait in question.

Best
Ben

On Friday, October 23, 2015, argossy notifications@github.com wrote:

Hi
my h2 estimate is negative (shown below). I didn't have any issue during
data munging. So I don't know what's wrong. BTW, my sample size is 300+, do
you think is it too small for estimating heritability or genetic
correlation? Thank you

Total Observed scale h2: -1.105 (1.5709)
Lambda GC: 1.0436
Mean Chi^2: 1.0409
Intercept: 1.0478 (0.0093)
Ratio: 1.1669 (0.2275)


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#38.

For scheduling matters, please contact Carla Hammond <
hammond@atgu.mgh.harvard.edu>

Benjamin Neale, Ph.D.
Assistant Professor
Analytic and Translational Genetics Unit
Massachusetts General Hospital
Institute Member
Stanley Center for Psychiatric Disease and Program in Medical and
Population Genetics
Broad Institute

@argossy argossy closed this as completed Oct 23, 2015
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