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WIP Integrate covariance methods into poe analysis methods #513

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IlhaH
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@IlhaH IlhaH commented May 24, 2024

Adds basic framework of allowing covariance regularization and any kind of optimal_shrinkage loss to be used when calculated POE effects. Assumes that an instance of the covariance regularization class is passed in, and a string of the singular value shrinkage loss is passed in.

IlhaH added 2 commits May 24, 2024 10:15
Adds basic framework of allowing covariance regularization and any kind of optimal_shrinkage loss to be used when calculated POE effects. Assumes that an instance of the covariance regularization class is passed in, and a string of the singular value shrinkage loss is passed in.
Add typing and docstring, ensures valid string input of covariance regularization method
@akotlar akotlar mentioned this pull request May 24, 2024
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@austinTalbot7241993 austinTalbot7241993 left a comment

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LGTM

@austinTalbot7241993 austinTalbot7241993 merged commit 6b12195 into bystrogenomics:master Jun 3, 2024
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2 participants