First commit of the code for the UCL-Magnae Greacia led collaboration on lung Outcome Prediction In this code, we use conda and pytorch to uniformize effort. To set up your Python environment:
- Install
conda
orminiconda
for your operating system.
For Linux:
- Create a Conda environment from the
environment.yml
file in the repository root, and activate it:
conda env create --file environment.yml
conda activate UCL_DL
For Windows:
- Create a Conda environment from the
environment_win.yml
file in the repository root, and activate it:
conda env create --file environment_win.yml
conda activate UCL_DL
To then set up your file as a module, please use
conda-develop /path/to/OutcomePrediction/
Data comments:
- Patient 0617-444138 is very strange (extrememly short CT). The max dose crop is not working, it is better removing it from the mastersheet file.