Set fossil flag for non-fossil taxa with fossil protonyms script

[jonkerz]

Db script: http://antcat.org/database_scripts/non_fossil_taxa_with_fossil_protonyms

[jonkerz]

• Run script - Done: http://antcat.org/activities?id=44985#activity-44985

EDIT_SUMMARY = "Set fossil flag for non-fossil taxa with fossil protonyms, see %github846"
jonkerz = User.find(60)
Activity.execute_script_activity jonkerz, EDIT_SUMMARY

# For PaperTrail
def antcat_bot
  @antcat_bot ||= User.find(62)
end
PaperTrail.request.whodunnit = antcat_bot.id

# NonFossilTaxaWithFossilProtonyms
soon_fossil_taxa = Taxon.extant.joins(:protonym).where(protonyms: { fossil: true }).includes(:protonym)
soon_fossil_taxa.each do |taxon|
  taxon.update!(fossil: true)
  taxon.create_activity :update, antcat_bot, edit_summary: EDIT_SUMMARY
end