elum

Take a blast output file and complete it with metadata if the subject sequences are found in NCBI genbank.

It requires a CSV file as input file:

query   subject pident  length  mismatch        gaps    qstart  qend    sstart  send    evalue  bitscore
TR348|c0_g1_i1  gi|768429225|ref|XM_011557484.1|        69.03   2218    657     14      1766    3974    789     2985    0       866
TR291|c0_g1_i2  gi|57506561|dbj|AB126052.1|     69.84   2261    627     29      2       2235    2494    4726    0       931
TR365|c0_g5_i2  gi|910316988|ref|XM_013305788.1|        74.82   2518    617     7       56      2564    68      2577    0       1667

Usage

python elum.py blast_file.csv output.csv your_email_address

Installation

Requirements

Compatibility

Licence

Authors

elum was written by Carlos Pena.