-
Notifications
You must be signed in to change notification settings - Fork 18
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Implement a linecut of the modulus in postprocessing #246
Conversation
Nice ! Is this how the pixel size is derived by default ? |
No, this is unrelated. The voxel sizes are chosen by the user beforehand because they are required for the interpolation into an orthonormal grid. The linecut and fits are done on this already interpolated object to get an idea about the resolution of the reconstruction. They take as well the user-defined voxel sizes to convert from a pixel number to a length scale in nm. |
Description
I added one step in post-processing, where line cuts through the reconstructed modulus are generated in Z, Y, X, and the gradient of the line cuts is fitted with a Gaussian line shape to estimate the resolution.
Fixes #195
Type of change
How has this been tested?
I added unit tests and ran the example dataset.
Checklist:
doit
and all tasks have passed