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README: File Path tassel_fasta_to_csv.R --args <tassel.fas.txt> <prefix> -> <prefix.fas.csv> tassel_hmn_to_tagseq.R --args <tassel.hmn.txt> <prefix.fas.csv> <prefix> -> <prefix.hmnfas.csv> tassel_filter_hapmap.R --args <prefix.hmnfas.csv> <sample.name.csv> <prefix> -> <prefix.filtered.csv> + graphics tassel_create_tree.R --args <prefix.filtered.csv> <prefix> -> <prefix.phylogroups.csv> + tree graphics tassel_create_gps_table.R --args <prefix.filtered.csv> <prefix.phylogroups.csv> <prefix.names.csv> <prefix> -> <prefix.gps.csv> crosscheck_samples.R --args <prefix.filtered.csv> <prefix>
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R scripts to filter Genotyping by Sequencing data from the TASSEL pipeline
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