Error in !df_msms$contaminant

[marioernestovaldes]

Hello! I am trying to run an analysis with PTXQC. The thing is when I try to analyze the entire 'txt' folder this error comes up:

... MSMS: MS^2 Cal (%s) done
Starting to work on MSMS: %s ...
Error in !df_msms$contaminant : invalid argument
Also: Warning message:
Using alpha for a discrete variable is not advised

could you please help me?

see attached the msms files I am currently using...

thanks in advance!

Mario
msms_files.zip

[cbielow]

Thanks for submitting a bug report.
The bug occurs because of the rare occasion when no evidence.txt is provided by the user.
Its fixed in the current development version on Github (use install.github(... to get it).
The CRAN package will take a while because I only submitted a new version yesterday (which includes the bug) and intervals should be at least a few weeks.

To work around the bug, either include evidence.txt or disable the MSMS:Contaminant metric in the YAML file.

I'll close the issue as resolved. Feel free to re-open if it pops back up.
Attached also your QC report from the files you uploaded.

[cbielow]

report_v0.92.6_msms_files.pdf

(Github only supports uploading PDFs out of the box -- no Html report -- sorry)