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Phylogenetic Monte Carlo: Quantifying Uncertainty in Phylogenetic Methods (now on CRAN)

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README.md

Phylogenetic Monte Carlo

  • Author: Carl Boettiger
  • License: CC0

This package accompanies my publication, with Graham Coop & Peter Ralph (2012) Is your phylogeny Informative? Measuring the power of comparative methods. In Evolution. (doi) (pdf) (arXiv) (code) (data)

Install

This repository provides the legacy version of geiger compatible with my pmc package (now archived, see my post on this issue for more background).

If you need the geiger that was, and/or you need pmc, you can install this copy directly from your R terminal. First, install the devtools package:

install.packages("devtools")
library(devtools)

and then you can install each from github with:

install_github("geiger", "cboettig")
install_github("pmc", "cboettig")

Getting Started

The best place to start learning the package commands is to read the package vignette, copy-pasting the examples in as you go. For a faster start, just look at the examples in the function documentation, i.e. ?pmc.

Bug Reports

If you find the package is giving unexpected results, is missing a feature you'd like, or have any other questions about the package, don't hesitate to email me.

You can also file an issue which will provide a record of the bug/request. Posting an issue also automatically sends me an email.

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