Phylogenetic Monte Carlo
NOTE This package is currently deprecated. See http://www.carlboettiger.info/2013/04/23/we-need-more-object-oriented-design-in-comparative-methods.html
- Author: Carl Boettiger
- License: CC0
This package accompanies my publication, with Graham Coop & Peter Ralph (2012) Is your phylogeny Informative? Measuring the power of comparative methods. In Evolution. (doi) (pdf) (arXiv) (code) (data)
The easiest way to install the current release is through the CRAN repository,
To install the current development version, there are a few options. One is to install
devtools package, which will let you install directly from github:
install.packages("devtools") library(devtools) install_github("pmc", "cboettig")
The other option is to download the current tarball, put it in the working directory, and then install from R using
install.packages("pmc*.tar.gz", ,type="source", repos=NULL)
The best place to start learning the package commands is to read the package vignette, copy-pasting the examples in as you go. For a faster start, just look at the examples in the function documentation, i.e.
If you find the package is giving unexpected results, is missing a feature you'd like, or have any other questions about the package, don't hesitate to email me.
You can also file an issue which will provide a record of the bug/request. Posting an issue also automatically sends me an email.