image DICOM with structure DICOM is not imported

[MohHu]

Dear Developer,

Good morning,

I have treatment plan in DICOM format that has set of images and structure. When I import them using CERR, I have this error:
Reading directory:E:\ct with contour\New folder ...
Reading header ...
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.sponsorID field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.protocolID field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.subjectID field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.submissionID field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.timeSaved field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.lastSavedInVer field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.CERRImportVersion field, leaving empty.
CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.anonymizedID field, leaving empty.
Reading comment ...
Reading scan ...
Loading Scan ...
'"java"' is not recognized as an internal or external command,
operable program or batch file.
ans =
1
Struct contents reference from a non-struct array object.
Error in populate_planC_scan_field (line 131)
sliceV = cast(imgobj.getInts(2.145386512000000e+09),'int16'); %OW
Error in populate_planC_field (line 83)
populate_planC_scan_field(names{i}, ...
Error in dcmdir2planC (line 53)
cellData = populate_planC_field(cellNames{i}, dcmdir_PATIENT, optS);
Error in CERRImportDCM4CHE (line 120)
planC = dcmdir2planC(combinedDcmdirS,mergeScansFlag,optS);
Error in CERR (line 133)
CERRImportDCM4CHE;
Error while evaluating UIControl Callback.

The TPS is MONACO
Is there any suggestion to overcome this problem?

Yours sincerely

[adityaapte]

The error message points to Java was not initialized. Can you try to run init_ML_DICOM from the command line. Or restart Matlab? Please share the anonymized dataset if the issue still persists. Are you using the latest from GitHub? Thanks.

…

On Sun, May 1, 2022, 10:03 AM MohHu ***@***.***> wrote: Dear Developer, Good morning, I have treatment plan in DICOM format that has set of images and structure. When I import them using CERR, I have this error: Reading directory:E:\ct with contour\New folder ... Reading header ... CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.sponsorID field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.protocolID field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.subjectID field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.submissionID field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.timeSaved field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.lastSavedInVer field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.CERRImportVersion field, leaving empty. CERR>> DICOM Import has no methods defined for import into the planC{indexS.header}.anonymizedID field, leaving empty. Reading comment ... Reading scan ... Loading Scan ... '"java"' is not recognized as an internal or external command, operable program or batch file. ans = 1 Struct contents reference from a non-struct array object. Error in populate_planC_scan_field (line 131) sliceV = cast(imgobj.getInts(2.145386512000000e+09),'int16'); %OW Error in populate_planC_field (line 83) populate_planC_scan_field(names{i}, ... Error in dcmdir2planC (line 53) cellData = populate_planC_field(cellNames{i}, dcmdir_PATIENT, optS); Error in CERRImportDCM4CHE (line 120) planC = dcmdir2planC(combinedDcmdirS,mergeScansFlag,optS); Error in CERR (line 133) CERRImportDCM4CHE; Error while evaluating UIControl Callback. The TPS is MONACO Is there any suggestion to overcome this problem? Yours sincerely — Reply to this email directly, view it on GitHub <#715>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAGNJBYI5RJMU6L7DDFOGMTVH2FL7ANCNFSM5UZ5VCWA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[MohHu]

Thank you for your prompt reply,

When I run ''init_ML_DICOM'' from the command line, the output is

init_ML_DICOM
ans =
1

I restarted Matlab, and I have the same problem,
Yes, I do. I am working with the last version.
I sent the link of the dataset to your email for ethical reasons

Yours sincerely