Importing NIfTI data

Jump to bottom Edit New page

aditiiyer edited this page Oct 5, 2020 · 6 revisions

Importing .nii volumes

   fileName = 'Path\to\niiFile\FileName.nii';    
   scanName = 'niiScan';
   old_planC = [];
   save_flag = 1;
   planC = nii2cerr(filename,scanName,old_planC,save_flag)

Importing .nii masks

    maskFileName = 'Path\to\niiMaskFile\MaskFileName.nii';    
    mask3M = nifti_read_volume(maskFileName);
    mask3M= flipdim(permute(mask3M,[2,1,3]),3);
    isUniform = 0;
    strName = 'niiMask';
    strCreationScanNum = 1;
    planC = maskToCERRStructure(mask3M,isUniform,strCreationScanNum,strName,planC);