Measuring Background Parenchymal Enhancement (BPE) on MRI
aditiiyer edited this page Apr 13, 2020
·
3 revisions
• CERR
• Plastimatch
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CERR-format files with the following sequences in order:
• T1 Non-fat-saturated
• T1 Fat-saturated (pre-contrast)
• T1 Fat-saturated (post-contrast) -
Matlab table containing pt IDs and laterality information
fpath = 'path\to\CERR_files';
batchBoundingBox(fpath);
Resulting structures 'Auto_bbox_right' and 'Auto_bbox_left' are saved to the CERR files.
fpath = 'path\to\CERR_files';
latPath= 'Path\to\laterality_table';
outPath = 'Path\to\output\Dir';
batchBPE(fpath,latPath,outPath);
Resulting FGT segmentations associated with the fat-saturated (pre contrast) scan are saved to the CERR files.
latPath= 'Path\to\laterality_table';
outPath = 'Path\to\output\Dir';
batchSpreadsheet(outPath,latPath);