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@cgplab

Cancer Genomics Prato (CGP) Lab

Cancer genomics at "Sandro Pitigliani" Medical Oncology Department, Hospital of Prato, Istituto Toscano Tumori, Prato, Italy

Popular repositories Loading

  1. RadAR RadAR Public

    A tool to perform comprehensive analysis of high-dimensional radiomic datasets

    R 14 5

  2. PAMES PAMES Public

    Tool to estimate purity of tumor samples exploiting DNA Methylation data

    R 10 8

  3. Rockermeth Rockermeth Public

    A tool for discovering Differentially Methylated Regions

    R 4 2

  4. ddSeeker ddSeeker Public

    A tool for processing Bio-Rad ddSEQ single cell RNA-seq data

    Python 4 3

  5. MIMESIS MIMESIS Public

    A package to identify type/subtype of tumor samples and estimate tumor content using minimal DNA-methylation signatures

    R 1 1

  6. PAMESdata PAMESdata Public

    Precomputed informative CpG sites and CpG islands to be used with PAMES package

    R 2

Repositories

Showing 9 of 9 repositories
  • MIMESIS Public

    A package to identify type/subtype of tumor samples and estimate tumor content using minimal DNA-methylation signatures

    cgplab/MIMESIS’s past year of commit activity
    R 1 MIT 1 0 0 Updated Aug 31, 2023
  • PAMES Public

    Tool to estimate purity of tumor samples exploiting DNA Methylation data

    cgplab/PAMES’s past year of commit activity
    R 10 GPL-3.0 8 2 0 Updated Nov 30, 2022
  • Rockermeth Public

    A tool for discovering Differentially Methylated Regions

    cgplab/Rockermeth’s past year of commit activity
    R 4 MIT 2 1 0 Updated Mar 7, 2022
  • RadAR Public

    A tool to perform comprehensive analysis of high-dimensional radiomic datasets

    cgplab/RadAR’s past year of commit activity
    R 14 MIT 5 6 1 Updated Jan 28, 2022
  • Rocker-meth Public

    Rockermeth is a tool for discovering Differentially Methylated Regions (DMRs)

    cgplab/Rocker-meth’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 3, 2021
  • PAMESdata Public

    Precomputed informative CpG sites and CpG islands to be used with PAMES package

    cgplab/PAMESdata’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Jan 28, 2021
  • covidapp Public

    A web application implementing models to predict ICU admission for COVID-19 patients based on clinical, laboratory and imaging parameters

    cgplab/covidapp’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 16, 2021
  • ddSeeker Public

    A tool for processing Bio-Rad ddSEQ single cell RNA-seq data

    cgplab/ddSeeker’s past year of commit activity
    Python 4 GPL-3.0 3 0 0 Updated Mar 25, 2020
  • ddSeeker_example_dataset Public
    cgplab/ddSeeker_example_dataset’s past year of commit activity
    0 0 1 0 Updated Dec 27, 2018

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