STIP: State Transition Inference Prediction
- R (>= 3.5.0)
- ComplexHeatmap
- VGAM
- circlize
- dplyr
- ggplot2
- clusterProfiler
- org.Hs.eg.db
- org.Mm.eg.db
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(c("ComplexHeatmap", "clusterProfiler", "org.Hs.eg.db", "org.Mm.eg.db"))
install.packages(c("VGAM", "circlize", "dplyr", "ggplot2"))
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("changxinw/STIP")
Please refer to example folder for a Seurat example.