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[python] Start move to {obs/var} specific arguments for get_anndata #1149

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merged 12 commits into from
Jun 28, 2024

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ivirshup
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@ivirshup ivirshup commented May 17, 2024

Closes #1035

But needs discussion on API wrt upstream packages.

@ivirshup ivirshup added the python api Related to the API label May 17, 2024
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codecov bot commented May 21, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 91.15%. Comparing base (39a5d1d) to head (b2c1860).
Report is 24 commits behind head on main.

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@@            Coverage Diff             @@
##             main    #1149      +/-   ##
==========================================
- Coverage   91.16%   91.15%   -0.02%     
==========================================
  Files          77       77              
  Lines        5896     5910      +14     
==========================================
+ Hits         5375     5387      +12     
- Misses        521      523       +2     
Flag Coverage Δ
unittests 91.15% <100.00%> (-0.02%) ⬇️

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@ivirshup ivirshup changed the title Start move to {obs/var} specific arguments for get_anndata [python] Start move to {obs/var} specific arguments for get_anndata May 23, 2024
@ivirshup ivirshup marked this pull request as ready for review May 24, 2024 21:22
Co-authored-by: Emanuele Bezzi <ebezzi@chanzuckerberg.com>
@ivirshup ivirshup requested a review from pablo-gar May 28, 2024 17:45
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This PR has not seen any activity in the past 4 weeks; if no one comments or reviews it in the next 3 days, this PR will be closed.

@github-actions github-actions bot added the Stale label Jun 26, 2024
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@ivirshup I think this can be merged now, correct?

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Yep! Merging now.

@ivirshup ivirshup merged commit 14e4404 into main Jun 28, 2024
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@ivirshup ivirshup deleted the ivirsh/column_names_args branch June 28, 2024 21:22
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Simplify column_names argument in get_anndata() method
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