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Fix seed data so repo path and repo name are correct #2318

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merged 1 commit into from
Apr 15, 2023
Merged

Fix seed data so repo path and repo name are correct #2318

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12 changes: 7 additions & 5 deletions augur/application/schema/alembic/versions/7_no_null_repo_path_and_repo_name.py
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@
from sqlalchemy.dialects import postgresql
from sqlalchemy.sql import text
import re
from augur.application.db.models import Repo


# revision identifiers, used by Alembic.
Expand All @@ -26,12 +27,13 @@ def upgrade():
if result:

for row in result:
regex = re.search(r"https:\/\/(github\.com\/[A-Za-z0-9 \- _]+\/)([A-Za-z0-9 \- _ .]+)$", row.repo_git)
if not regex:

owner_name, repo_name = Repo.parse_github_repo_url(row.repo_git)
if not owner_name or not repo_name:
continue
repo_path = regex[0]
repo_name = regex[1]

repo_path = f"github.com/{owner_name}/"

conn.execute(text(f"""
UPDATE "repo"
SET repo_path=:path,repo_name=:name
Expand Down