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PR File Patch / Varoius Bug Fixes #2790

Merged
merged 41 commits into from
May 21, 2024
Merged

PR File Patch / Varoius Bug Fixes #2790

merged 41 commits into from
May 21, 2024

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sgoggins
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Description

  • The purpose of this patch is primarily to reduce the number of errors associated with pull request file retrieval on GitHub. A number of specific errors are corrected as indicated by the extensive commit comments in this PR.

  • Yes, I signed my commits.

sgoggins and others added 30 commits March 18, 2024 19:03
Signed-off-by: Sean Goggins <outdoors@acm.org>
scipy 1.13.0 breaks a lot of stuff
Signed-off-by: Sean P. Goggins <gogginss@missouri.edu>
Signed-off-by: Sean P. Goggins <gogginss@missouri.edu>
Signed-off-by: Markus Hauru <mhauru@turing.ac.uk>
Signed-off-by: Isaac Milarsky <imilarsky@gmail.com>
Fix Facade Task Signature to Take `repo_git` instead of `repo_id`
Signed-off-by: Andrew Brain <andrewbrain2019@gmail.com>
Rollback transaction when query throws exception
Signed-off-by: Gary White Jr <7660110+GaryPWhite@users.noreply.github.com>
Signed-off-by: Gary White Jr <7660110+GaryPWhite@users.noreply.github.com>
handle rate limiting and more repo load messages
Fix some typos and broken links in the docs
added `sudo apt-get install libpq-dev` as it wasn't installed by default on a new instance

Signed-off-by: Sean P. Goggins <outdoors@acm.org>
Signed-off-by: Andrew Brain <andrewbrain2019@gmail.com>
```bash
Traceback (most recent call last):
  File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 451, in trace_task
    R = retval = fun(*args, **kwargs)
                 ^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/github/virtualenvs/hosted/lib/python3.11/site-packages/celery/app/trace.py", line 734, in __protected_call__
    return self.run(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/github/augur/augur/tasks/github/pull_requests/files_model/tasks.py", line 18, in process_pull_request_files
    pull_request_files_model(repo.repo_id, logger, augur_db, manifest.key_auth)
  File "/home/ubuntu/github/augur/augur/tasks/github/pull_requests/files_model/core.py", line 68, in pull_request_files_model
    pr_file_rows += [{
                    ^^
  File "/home/ubuntu/github/augur/augur/tasks/github/pull_requests/files_model/core.py", line 68, in <listcomp>
    pr_file_rows += [{
                    ^^
  File "/home/ubuntu/github/augur/augur/tasks/github/util/gh_graphql_entities.py", line 344, in __iter__
    coreData['totalCount']
    ~~~~~~~~^^^^^^^^^^^^^^
TypeError: 'NoneType' object is not subscriptable
```
```python
            if coreData is not None:
                self.logger.info(f"... core data obtained")
            else:
                self.logger.info(f"Helen, the ghost in our machine, did not get a numerical result for core data (value): {data} \n Zero value assigned.")
                coreData['totalCount'] = 0
        except KeyError as e:
            self.logger.error("Could not extract paginate result because there was no data returned")
            self.logger.error(
                ''.join(traceback.format_exception(None, e, e.__traceback__)))

            self.logger.info(f"Graphql paramters: {params}")
            return
```
```python
try:
    if coreData is not None:
        if coreData.get('totalCount') is not None:
            self.logger.info("... core data obtained")
        else:
            self.logger.info(f"Helen, the ghost in our machine, did not get a numerical result for core data (value): {data} \n Zero value assigned.")
            coreData['totalCount'] = 0
    else:
        self.logger.error("Core data is None, cannot proceed with operations on it.")
except KeyError as e:
    self.logger.error("Could not extract paginate result because there was no data returned")
    self.logger.error(''.join(traceback.format_exception(None, e, e.__traceback__)))
```
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sgoggins and others added 2 commits May 13, 2024 17:48
Signed-off-by: Sean P. Goggins <s@goggins.com>
ABrain7710
ABrain7710 previously approved these changes May 13, 2024
Signed-off-by: Andrew Brain <andrewbrain2019@gmail.com>
ABrain7710 and others added 2 commits May 13, 2024 20:00
Signed-off-by: Andrew Brain <andrewbrain2019@gmail.com>
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OK

augur/tasks/github/pull_requests/tasks.py Outdated Show resolved Hide resolved
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@sgoggins sgoggins requested a review from ABrain7710 May 14, 2024 16:42
@sgoggins sgoggins added deployed version Live problems with deployed versions API Related to Augur's metrics API CHAOSS Issues that relate directly to our goal of being a good reference implementation of CHAOSS metrics documentation Updates documentation docker Related to our Docker images CLI Related to Augur's CLI database Related to Augur's unifed data model discussion Seeking active feedback, usually for items under active development admin Administrative/housekeeping/community tasks bug-fix Fixes a bug add-feature Adds new features labels May 14, 2024
sgoggins and others added 2 commits May 15, 2024 11:52
Signed-off-by: Sean P. Goggins <s@goggins.com>
Signed-off-by: Andrew Brain <andrewbrain2019@gmail.com>
@ABrain7710 ABrain7710 changed the base branch from main to dev May 20, 2024 23:25
@ABrain7710 ABrain7710 merged commit 064a917 into dev May 21, 2024
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add-feature Adds new features admin Administrative/housekeeping/community tasks API Related to Augur's metrics API bug-fix Fixes a bug CHAOSS Issues that relate directly to our goal of being a good reference implementation of CHAOSS metrics CLI Related to Augur's CLI database Related to Augur's unifed data model deployed version Live problems with deployed versions discussion Seeking active feedback, usually for items under active development docker Related to our Docker images documentation Updates documentation
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6 participants