Here you can find the outputs from RMarkdown documents for the paper:
Vessaz, F., C. J. Marsh, J. Bijoux, G. Gendron & C. Mason-Parker (2022) Recovery trajectories of oceanic reef ecosystems following multiple mass coral bleaching events. Marine Biology, in press.
Each document contains details, including all R code used, for the full analysis procedure, from data exploration, model checking and selection, validation, and through to visualisation of results. The same outputs can be found as pdfs in the supplementary material online.
A separate document is provided for each component of the reef community investigated:
Proportion of Total coral cover
Proportion of acropora coral cover
Or all documents can be accessed from the wiki: https://github.com/charliem2003/SeychellesReefRecovery/wiki