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Chuan He Group at UChicago

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Chuan He Group at UChicago

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  1. m6A-SACseq m6A-SACseq Public

    Forked from y9c/m6A-SACseq

    Optimized protocol for m6A-SAC-seq (WIP)

    Python

  2. db db Public

    curated bioinformatic database (from public source, with some modifications)

  3. KAS-pipe KAS-pipe Public

    Forked from rowyang/KAS-pipe

    KAS-pipe is an analysis pipeline for KAS-seq data. KAS-seq allows rapid (within 5 min), sensitive and genome-wide capture and mapping of ssDNA produced by transcriptionally active RNA polymerases, …

    Shell

  4. KAS-Analyzer KAS-Analyzer Public

    Forked from Ruitulyu/KAS-Analyzer

    Toolkits to process and analyze KAS-seq and spKAS-seq data.

    Shell

  5. .github .github Public

  6. m6A-SAC-seq m6A-SAC-seq Public

    Forked from CTLife/m6A-SAC-seq

    Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.

    Perl

Repositories

Showing 10 of 14 repositories
  • pseudoU-BIDseq Public Forked from y9c/pseudoU-BIDseq

    🧪 BID-seq for detecting pseudouridine modification on RNA

    chelab/pseudoU-BIDseq’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Oct 25, 2024
  • m5C-UBSseq Public Forked from y9c/m5C-UBSseq

    Ultrafast bisulfite

    chelab/m5C-UBSseq’s past year of commit activity
    Python 0 3 0 0 Updated Apr 24, 2024
  • KAS-Analyzer Public Forked from Ruitulyu/KAS-Analyzer

    Toolkits to process and analyze KAS-seq and spKAS-seq data.

    chelab/KAS-Analyzer’s past year of commit activity
    Shell 0 MIT 4 0 0 Updated Jan 9, 2024
  • ARTR-seq Public Forked from mingming-cgz/ARTR-seq
    chelab/ARTR-seq’s past year of commit activity
    Shell 0 MIT 2 0 0 Updated Aug 29, 2023
  • db Public

    curated bioinformatic database (from public source, with some modifications)

    chelab/db’s past year of commit activity
    0 0 0 0 Updated Apr 9, 2023
  • m6A-SACseq Public Forked from y9c/m6A-SACseq

    Optimized protocol for m6A-SAC-seq (WIP)

    chelab/m6A-SACseq’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Feb 26, 2023
  • .github Public
    chelab/.github’s past year of commit activity
    0 0 0 0 Updated Sep 3, 2022
  • eTAM-seq_workflow Public Forked from shunliubio/eTAM-seq_workflow

    A workflow for eTAM-seq data processing.

    chelab/eTAM-seq_workflow’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Aug 19, 2022
  • m6A-SAC-seq Public Forked from CTLife/m6A-SAC-seq

    Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.

    chelab/m6A-SAC-seq’s past year of commit activity
    Perl 0 3 0 0 Updated Aug 4, 2022
  • KAS-pipe Public Forked from rowyang/KAS-pipe

    KAS-pipe is an analysis pipeline for KAS-seq data. KAS-seq allows rapid (within 5 min), sensitive and genome-wide capture and mapping of ssDNA produced by transcriptionally active RNA polymerases, DNA replication or other processes in situ.

    chelab/KAS-pipe’s past year of commit activity
    Shell 0 3 0 0 Updated Apr 6, 2022
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