How to extract all the activities measured for a protein

[wmmxk]

I was trying to download all the measured activities for this protein (CHEMBL5455). I can download the csv file from the following link:
https://www.ebi.ac.uk/chembl/g/#browse/activities/filter/target_chembl_id%3ACHEMBL5455

Is there a way to automate this in Python?

Thanks,
Xiaokang

[MatthewMasters]

Absolutely. If you follow the examples in the README, you should be able to piece together

from chembl_webresource_client.new_client import new_client
activity = new_client.activity
result = activity.filter(target_chembl_id="CHEMBL5455")
print(result[0])
print(result[0].find("molecule_chembl_id")

[wmmxk]

Thanks Mathew for your reply. Oh. It is so convenient. Best, Xiaokang

…

On Sat, Apr 6, 2019 at 9:41 AM Matthew Masters ***@***.***> wrote: Absolutely. If you follow the examples in the README, you should be able to piece together from chembl_webresource_client.new_client import new_client activity = new_client.activity result = activity.filter(target_chembl_id="CHEMBL5455") print(result[0]) print(result[0].find("molecule_chembl_id") — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#54 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AKJ7dVPMSJQqVol3-16gZz6Cxzx2V0Sjks5veM4lgaJpZM4cY8UT> .

-- Xiaokang Wang Biomedical Engineering Department University of California-Davis

[MatthewMasters]

Great! I'm glad that was helpful. Be sure to close the issue if everything is good ;)