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checkpoint for scaffolding #521

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merged 1 commit into from
Sep 15, 2023
Merged

checkpoint for scaffolding #521

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1 change: 1 addition & 0 deletions CommandLines.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -294,6 +294,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->ul_pst_join = 1;
asm_opt->trio_cov_het_ovlp = -1;
asm_opt->ul_min_base = 0;
asm_opt->self_scaf = 0;
}

void destory_enzyme(enzyme* f)
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3 changes: 2 additions & 1 deletion CommandLines.h
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Expand Up @@ -5,7 +5,7 @@
#include <pthread.h>
#include <stdint.h>

#define HA_VERSION "0.19.6-r595"
#define HA_VERSION "0.19.6-r597"

#define VERBOSE 0

Expand Down Expand Up @@ -147,6 +147,7 @@ typedef struct {
uint8_t dbg_ovec_cal;
uint8_t hifi_pst_join, ul_pst_join;
uint32_t ul_min_base;
uint8_t self_scaf;
} hifiasm_opt_t;

extern hifiasm_opt_t asm_opt;
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