Update Scala CLI Template (backport #3757)

[mergify]

This is an automatic backport of pull request #3757 done by Mergify.

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Original PR Body

Contributor Checklist

• Did you add Scaladoc to every public function/method?
• Did you add at least one test demonstrating the PR?
• Did you delete any extraneous printlns/debugging code?
• Did you specify the type of improvement?
• Did you add appropriate documentation in docs/src?
• Did you request a desired merge strategy?
• Did you add text to be included in the Release Notes for this change?

Type of Improvement

• Internal or build-related (includes code refactoring/cleanup)

Desired Merge Strategy

• Squash

Release Notes

• Use "dep" instead of deprecated "lib"
• Move ChiselStage import above import chisel3._
  • This makes users less likely to run into issues adding import chisel3.util._
• Bump versions in Github workflows

Reviewer Checklist (only modified by reviewer)

• Did you add the appropriate labels? (Select the most appropriate one based on the "Type of Improvement")
• Did you mark the proper milestone (Bug fix: 3.5.x, 3.6.x, or 5.x depending on impact, API modification or big change: 6.0)?
• Did you review?
• Did you check whether all relevant Contributor checkboxes have been checked?
• Did you do one of the following when ready to merge:
  • Squash: You/ the contributor Enable auto-merge (squash), clean up the commit message, and label with Please Merge.
  • Merge: Ensure that contributor has cleaned up their commit history, then merge with Create a merge commit.