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Fix wrong configuration of shaded jar that removed some classes from … #788

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Run time

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Job	Run time
test-solver (1s)	6m 11s
test-solver (10s)	16m 30s
test-solver (checker)	8m 20s
test-solver (ibex)	3m 37s
test-mzn (mzn)	12m 18s
test-parser (xcsp)	4m 4s
test-parser (dimacs)	1m 27s
test-parser (mps)	4m 48s
	57m 15s